Browse Element(s) Details


OsAffx.26564.1.S1_at

Description tigr:9632.m03109
TID=OsAffx.26564.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3257011/11hypothetical protein
LOC_Os09g329722/11hypothetical protein
LOC_Os04g518002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32530OsAffx.3980.1.S1_at8/114+19395529..19397795hypothetical protein
LOC_Os04g32540Os.49108.2.S1_x_at10/114+19404504..19408114Serine carboxypeptidase family protein, expressed
LOC_Os04g32550Os.4650.1.S1_at10/114+19410796..19413447Defender against cell death 1, putative, expressed
LOC_Os04g32560Os.37370.1.S1_at11/114+19413897..19420445ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os04g32570OsAffx.26564.1.S1_at11/114+19420993..19421784hypothetical protein
LOC_Os04g32580OsAffx.26288.1.S1_at11/114+19423109..19425313expressed protein
LOC_Os04g32580Os.20057.1.S1_at11/114+19423109..19425313expressed protein
LOC_Os04g32580OsAffx.24671.1.S1_s_at1/114+19423109..19425313expressed protein
LOC_Os04g32590Os.5371.1.S1_s_at11/114+19425396..19428386expressed protein
LOC_Os04g32590OsAffx.14098.1.S1_at11/114+19425396..19428386expressed protein
LOC_Os04g32600OsAffx.26289.1.S1_at10/114+19439893..19442461expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006970biological_processresponse to osmotic stress
GO:0009611biological_processresponse to wounding
GO:0009631biological_processcold acclimation
GO:0009651biological_processresponse to salt stress
GO:0009800biological_processcinnamic acid biosynthesis
GO:0009892biological_processnegative regulation of metabolism
GO:0010224biological_processresponse to UV-B
GO:0016481biological_processnegative regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26564.1.S1_at--222--1854Chr09:19681938..19681962 (25 bp)
ACGCATCAGCCGGTTAGCGCCGGGA
LOC_Os09g32972
OsAffx.26564.1.S1_at--684--394Chr09:19681942..19681966 (25 bp)
ATCAGCCGGTTAGCGCCGGGACCAG
LOC_Os09g32972
OsAffx.26564.1.S1_at--47--6691Chr04:19421502..19421526 (25 bp)
GTTGCCGCGGCAAGCGAGCTGACTA
LOC_Os04g32570
OsAffx.26564.1.S1_at--37--4151Chr04:19421497..19421521 (25 bp)
CGCGGCAAGCGAGCTGACTACGACG
LOC_Os04g32570
OsAffx.26564.1.S1_at--216--5711Chr04:19421482..19421506 (25 bp)
GACTACGACGGCCATCACTGTCGGC
LOC_Os04g32570
OsAffx.26564.1.S1_at--914--4311Chr04:19421386..19421410 (25 bp)
CCTTGTAGTCGTCGCTAGTGGCGGA
LOC_Os04g32570
OsAffx.26564.1.S1_at--697--7691Chr04:19421360..19421384 (25 bp)
GGGTCTCTGGCGGAGGCCGAGTCAG
LOC_Os04g32570
OsAffx.26564.1.S1_at--269--4511Chr04:19421345..19421369 (25 bp)
GCCGAGTCAGCGACGGAGGTGAGCT
LOC_Os04g32570
OsAffx.26564.1.S1_at--193--971Chr04:19421306..19421330 (25 bp)
AGGAGCGCCGCGAAGTCGTCGTTGC
LOC_Os04g32570
OsAffx.26564.1.S1_at--444--4591Chr04:19421257..19421281 (25 bp)
GCGACTTGGCGGTGAGGCTTACGGC
LOC_Os04g32570
OsAffx.26564.1.S1_at--181--2311Chr04:19421225..19421249 (25 bp)
AAAGGGCGTGCTTTGGTTGGCTGGG
LOC_Os04g32570
Target Sequence 
ACGCATCAGCCGGTTAGCGCCGGGACCAGCGTTGCCGCGGCAAGCGAGCTGACTACGACGGCCATCACTGTCGGCTTCCC
GTCCCTGGCGGTGGCGCCGGCGCGAGGGAGCTCGAGGAGGAAGGAGGGAAGGCTGGGAGGGGTCTTCCTTGTAGTCGTCG
CTAGTGGCGGAGGGGTCTCTGGCGGAGGCCGAGTCAGCGACGGAGGTGAGCTCGAGCTCCGTGTCGAGGAGCGCCGCGAA
GTCGTCGTTGCCGGTCGATGGCGACGGGGAGGACAGCGACTTGGCGGTGAGGCTTACGGCCGAGGGCAAAGGGCGTGCTT
TGGTTGGCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis