Browse Element(s) Details


OsAffx.3980.1.S1_at

Description tigr:9632.m03103
TID=OsAffx.3980.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g325308/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32510OsAffx.26287.1.S1_at11/114+19376842..19378923expressed protein
LOC_Os04g32520OsAffx.3979.1.S1_at11/114+19389594..19391879hypothetical protein
LOC_Os04g32530OsAffx.3980.1.S1_at8/114+19395529..19397795hypothetical protein
LOC_Os04g32540Os.49108.2.S1_x_at10/114+19404504..19408114Serine carboxypeptidase family protein, expressed
LOC_Os04g32550Os.4650.1.S1_at10/114+19410796..19413447Defender against cell death 1, putative, expressed
LOC_Os04g32560Os.37370.1.S1_at11/114+19413897..19420445ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os04g32570OsAffx.26564.1.S1_at11/114+19420993..19421784hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3980.1.S1_at--524--3031Chr04:19397730..19397754 (25 bp)
AATGCCATGTTTCAAGGTCACCAAA
LOC_Os04g32530
OsAffx.3980.1.S1_at--341--6831Chr04:19397722..19397746 (25 bp)
GTTTCAAGGTCACCAAATGCCAGTG
LOC_Os04g32530
OsAffx.3980.1.S1_at--170--7111Chr04:19397714..19397738 (25 bp)
GTCACCAAATGCCAGTGTTTTCGGT
LOC_Os04g32530
OsAffx.3980.1.S1_at--918--2271Chr04:19397437..19397732 (25 bp)
AAATGCCAGTGTTTTCGGTTTGAAT
LOC_Os04g32530
OsAffx.3980.1.S1_at--544--10731Chr04:19394989..19395401 (25 bp)
TTGAGTGTACAAAATTAGACGGTCA
NONE
OsAffx.3980.1.S1_at--1002--9851NONE
TACAAAGAAATGGTCCTCAGCCTCC
NONE
OsAffx.3980.1.S1_at--628--2311NONE
AAAGAAATGGTCCTCAGCCTCCCGG
NONE
OsAffx.3980.1.S1_at--411--3671Chr04:19395784..19395805 (22 bp)
CTTTGTCCCGGAGCAAGCAGCAATT
LOC_Os04g32530
OsAffx.3980.1.S1_at--411--9311Chr04:19395627..19395800 (25 bp)
TCCCGGAGCAAGCAGCAATTCGTAA
LOC_Os04g32530
OsAffx.3980.1.S1_at--1132--3171Chr04:19395612..19395634 (23 bp)
CAATTCGTAATGCAGAGGTCTCCAC
LOC_Os04g32530
OsAffx.3980.1.S1_at--365--3011Chr04:19395604..19395628 (25 bp)
AATGCAGAGGTCTCCACCCTGAGGT
LOC_Os04g32530
Target Sequence 
AATGCCATGTTTCAAGGTCACCAAATGCCAGTGTTTTCGGTTTGAATATAAGCTTGAAAAACGATTGAAAATTTTGTTTG
AGTGTACAAAATTAGACGGTCAACTGACGGGAGGGATATGGAAGAGATCAAAATCAAATTTGGGGATATACAAAGAAATG
GTCCTCAGCCTCCCGGCCTCCTTTGTCCCGGAGCAAGCAGCAATTCGTAATGCAGAGGTCTCCACCCTGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis