Browse Element(s) Details


OsAffx.26287.1.S1_at

Description tigr:9632.m03101
TID=OsAffx.26287.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3251011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32500OsAffx.14096.1.S1_at11/114+19354155..19355052hypothetical protein
LOC_Os04g32500OsAffx.22615.1.S1_x_at1/114+19354155..19355052hypothetical protein
LOC_Os04g32510OsAffx.26287.1.S1_at11/114+19376842..19378923expressed protein
LOC_Os04g32520OsAffx.3979.1.S1_at11/114+19389594..19391879hypothetical protein
LOC_Os04g32530OsAffx.3980.1.S1_at8/114+19395529..19397795hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26287.1.S1_at--1061--1851Chr04:19377269..19377293 (25 bp)
ACGACGTGCTGGTGCTCCCGGGCAT
LOC_Os04g32510
OsAffx.26287.1.S1_at--19--611Chr04:19377331..19377355 (25 bp)
ATGCCCGGCATTCCGCAGGCGTCGA
LOC_Os04g32510
OsAffx.26287.1.S1_at--1131--4991Chr04:19377345..19377369 (25 bp)
GCAGGCGTCGATACCCACGCACATG
LOC_Os04g32510
OsAffx.26287.1.S1_at--906--9251Chr04:19377493..19377517 (25 bp)
TCCTCGGGCTTCGACGCGATCAGGG
LOC_Os04g32510
OsAffx.26287.1.S1_at--336--2891Chr04:19377953..19377976 (24 bp)
AAGGGAGGGAGCCATTCTTGCCTCA
LOC_Os04g32510
OsAffx.26287.1.S1_at--55--9591Chr04:19377967..19377991 (25 bp)
TCTTGCCTCAGATTCCAAGGAGCTA
LOC_Os04g32510
OsAffx.26287.1.S1_at--1014--2911Chr04:19377983..19378004 (22 bp)
AAGGAGCTACCTACGGATCAAGGAT
LOC_Os04g32510
OsAffx.26287.1.S1_at--789--7351Chr04:19378236..19378260 (25 bp)
GTGACAGTAAGGTTGCTGACCAAGT
LOC_Os04g32510
OsAffx.26287.1.S1_at--792--6651Chr04:19378247..19378271 (25 bp)
GTTGCTGACCAAGTACCTGGTTAAC
LOC_Os04g32510
OsAffx.26287.1.S1_at--612--7471Chr04:19378828..19378852 (25 bp)
GTGTGTCTTGGGTGGCACATCAGCC
LOC_Os04g32510
OsAffx.26287.1.S1_at--735--9671Chr04:19378858..19378882 (25 bp)
TCACCACTTGACAAGAGCTTCTCCA
LOC_Os04g32510
Target Sequence 
ACGACGTGCTGGTGCTCCCGGGCATGCCGCCGCCGGGATCCTTCCTCCGCCCCGGCCCCGCCATGCCCGGCATTCCGCAG
GCGTCGATACCCACGCACATGCTGCGCGCCGCCCCGCCCTGGCTGCCACCGTGGAGCCCCGTGGCCGCGCCGCCGCCGCT
CCTCCCGTTCCCCCACCAACACCGCGCGTTCTACGCCGCGCCGCCGACGACGACGCCGCCCGCCTCCTCGGGCTTCGACG
CGATCAGGGTCGTCCTCCCGCCGTCCGCCGTCGCCGCCGCCGCCGGCGTCTGGTTCGTGCTCCAGGCCGCGCCGCTCCAA
GGGAGGGAGCCATTCTTGCCTCAGATTCCAAGGAGCTACCTACGGATCAAGGATGGGAGGGTGACAGTAAGGTTGCTGAC
CAAGTACCTGGTTAACAAGCTTGGATTGGAAGATGAATCAGAGGTGAGGGGTGTGTGTCTTGGGTGGCACATCAGCCCCC
CCTCACCACTTGACAAGAGCTTCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis