Browse Element(s) Details


OsAffx.14096.1.S1_at

Description tigr:9632.m03100
TID=OsAffx.14096.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3250011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32500OsAffx.14096.1.S1_at11/114+19354155..19355052hypothetical protein
LOC_Os04g32500OsAffx.22615.1.S1_x_at1/114+19354155..19355052hypothetical protein
LOC_Os04g32510OsAffx.26287.1.S1_at11/114+19376842..19378923expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14096.1.S1_at--166--1131Chr04:19354687..19354711 (25 bp)
AGTGCATGCATCCATTAAAGGTCTC
LOC_Os04g32500
OsAffx.14096.1.S1_at--76--5611Chr04:19354638..19354662 (25 bp)
GACAATGTGGAACCTGCTTGGATTT
LOC_Os04g32500
OsAffx.14096.1.S1_at--665--4471Chr04:19354604..19354628 (25 bp)
GCCGGAATTGCCACTGATAGGCCTT
LOC_Os04g32500
OsAffx.14096.1.S1_at--116--6491Chr04:19354589..19354613 (25 bp)
GATAGGCCTTTGATCGTCAGGACTA
LOC_Os04g32500
OsAffx.14096.1.S1_at--261--7111Chr04:19354574..19354598 (25 bp)
GTCAGGACTACCATCGGAAGGGCAT
LOC_Os04g32500
OsAffx.14096.1.S1_at--815--6891Chr04:19354479..19354503 (25 bp)
GTATCGGAAATCGTCAACAACAGCA
LOC_Os04g32500
OsAffx.14096.1.S1_at--467--2491Chr04:19354461..19354485 (25 bp)
AACAGCAATGCAGGGTCGGCGAGCC
LOC_Os04g32500
OsAffx.14096.1.S1_at--486--7191Chr04:19354447..19354471 (25 bp)
GTCGGCGAGCCATCATCCAAGGAAG
LOC_Os04g32500
OsAffx.14096.1.S1_at--870--5491Chr04:19354404..19354428 (25 bp)
GAACAGGGATTATTTGGCGCATCAT
LOC_Os04g32500
OsAffx.14096.1.S1_at--1030--8391Chr04:19354350..19354374 (25 bp)
TGGCCCCAACTTCAATATCTACGTA
LOC_Os04g32500
OsAffx.14096.1.S1_at--110--6231Chr04:19354304..19354328 (25 bp)
GAGGCCATTGCCACCATGAGGACAG
LOC_Os04g32500
Target Sequence 
AGTGCATGCATCCATTAAAGGTCTCAAAAGTTTTAGACAAGAGAGGATTGACAATGTGGAACCTGCTTGGATTTGATACA
AAAGCCGGAATTGCCACTGATAGGCCTTTGATCGTCAGGACTACCATCGGAAGGGCATCCAAAAGAGGAACCAACGACAA
CAAAGGCCATAAAAGCAGATCATACCAGAGCACTGCCATAGGAGAGCAGTATCGGAAATCGTCAACAACAGCAATGCAGG
GTCGGCGAGCCATCATCCAAGGAAGATTCTTCAGCTTGAGAACGAACAGGGATTATTTGGCGCATCATGGCAAAAGAAGT
CTGCGGTTGTGGTGCTGTGGCCCCAACTTCAATATCTACGTAGGGGAAAGCATAGAGAGGCTAGAGGCCATTGCCACCAT
GAGGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis