Browse Element(s) Details


OsAffx.22615.1.S1_x_at

Description gb:NM_185323.1
DB_XREF= gi:34897731
TID=OsAffx.22615.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g325001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32500OsAffx.14096.1.S1_at11/114+19354155..19355052hypothetical protein
LOC_Os04g32500OsAffx.22615.1.S1_x_at1/114+19354155..19355052hypothetical protein
LOC_Os04g32510OsAffx.26287.1.S1_at11/114+19376842..19378923expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22615.1.S1_x_at--79--6012Chr06:353645..353669 (25 bp)
GAGAGGGCAAATTCAAAGACCAATC
NONE
OsAffx.22615.1.S1_x_at--804--2771Chr06:353630..353654 (25 bp)
AAGACCAATCAACCTTCAACATTGA
NONE
OsAffx.22615.1.S1_x_at--788--2831Chr06:353606..353630 (25 bp)
AAGTATTTGAATGGCTGCACAATAA
NONE
OsAffx.22615.1.S1_x_at--361--8331Chr06:353594..353618 (25 bp)
GGCTGCACAATAACTTATGTCTTGC
NONE
OsAffx.22615.1.S1_x_at--405--351Chr06:353585..353609 (25 bp)
ATAACTTATGTCTTGCTGAGAGGAC
NONE
OsAffx.22615.1.S1_x_at--653--3631Chr06:353574..353598 (25 bp)
CTTGCTGAGAGGACAAAGACGGTCG
NONE
OsAffx.22615.1.S1_x_at--57--5331Chr06:353547..353571 (25 bp)
GAAGAGGTGGCCTGCAACTTGAAAT
NONE
OsAffx.22615.1.S1_x_at--204--5591Chr06:353527..353551 (25 bp)
GAAATTACAAGATCATGGTGTTAAC
NONE
OsAffx.22615.1.S1_x_at--900--3091Chr06:353502..353526 (25 bp)
AATAGAATTTGGCATCAGACTCGAA
NONE
OsAffx.22615.1.S1_x_at--1157--211Chr06:353496..353520 (25 bp)
ATTTGGCATCAGACTCGAATAAGGA
NONE
OsAffx.22615.1.S1_x_at--224--511Chr06:353463..353487 (25 bp)
ATCGAGATGGATTTGGTGTTGAAAC
NONE
Target Sequence 
GAGAGGGCAAATTCAAAGACCAATCAACCTTCAACATTGAAGTATTTGAATGGCTGCACAATAACTTATGTCTTGCTGAG
AGGACAAAGACGGTCGAGGAAGAGGTGGCCTGCAACTTGAAATTACAAGATCATGGTGTTAACAATAGAATTTGGCATCA
GACTCGAATAAGGAGGAAGGAGATCGAGATGGATTTGGTGTTGAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22615.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis