Browse Element(s) Details


OsAffx.3979.1.S1_at

Description tigr:9632.m03102
TID=OsAffx.3979.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3252011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32510OsAffx.26287.1.S1_at11/114+19376842..19378923expressed protein
LOC_Os04g32520OsAffx.3979.1.S1_at11/114+19389594..19391879hypothetical protein
LOC_Os04g32530OsAffx.3980.1.S1_at8/114+19395529..19397795hypothetical protein
LOC_Os04g32540Os.49108.2.S1_x_at10/114+19404504..19408114Serine carboxypeptidase family protein, expressed
LOC_Os04g32550Os.4650.1.S1_at10/114+19410796..19413447Defender against cell death 1, putative, expressed
LOC_Os04g32560Os.37370.1.S1_at11/114+19413897..19420445ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3979.1.S1_at--1014--1191Chr04:19390608..19390632 (25 bp)
AGTATCGCGAGTCGTGAGACCTCAC
LOC_Os04g32520
OsAffx.3979.1.S1_at--4--4531Chr04:19390642..19390666 (25 bp)
GCCGCATTTGGCATCAGCACAGGTG
LOC_Os04g32520
OsAffx.3979.1.S1_at--486--5571Chr04:19390930..19390954 (25 bp)
GAAAGATTCCTCCTTGCATGATCAA
LOC_Os04g32520
OsAffx.3979.1.S1_at--139--2571Chr04:19390978..19391002 (25 bp)
AACTGATCGGAGCACCTGCTTGAAA
LOC_Os04g32520
OsAffx.3979.1.S1_at--375--1591Chr04:19391184..19391208 (25 bp)
AGCTGTTTAAGCCACTGTAGCCAGA
LOC_Os04g32520
OsAffx.3979.1.S1_at--492--6971Chr04:19391200..19391224 (25 bp)
GTAGCCAGACATTTCAACTCATGGT
LOC_Os04g32520
OsAffx.3979.1.S1_at--98--2711Chr04:19391232..19391256 (25 bp)
AAGCTTCTGATTTCAGGTGGCGCGG
LOC_Os04g32520
OsAffx.3979.1.S1_at--525--8471Chr04:19391249..19391273 (25 bp)
TGGCGCGGCAGCTCGAAAGCAATCA
LOC_Os04g32520
OsAffx.3979.1.S1_at--259--10151Chr04:19391279..19391777 (25 bp)
TATCCATGACTGGAGATCCCTGCAT
LOC_Os04g32520
OsAffx.3979.1.S1_at--90--6391Chr04:19391767..19391791 (25 bp)
GATCCCTGCATCATCATTATATTAA
LOC_Os04g32520
OsAffx.3979.1.S1_at--909--3411Chr04:19391809..19391833 (25 bp)
CAGAAGCTCACTATCTTGATTGGAA
LOC_Os04g32520
Target Sequence 
AGTATCGCGAGTCGTGAGACCTCACCCTTGGTGTGCCGCATTTGGCATCAGCACAGGTGAGACTGACATCATGGGGACAG
CAAAAAACCCAATTGGCTTCAGGTGCAACAAATGCATGAAGAAAGATTCCTCCTTGCATGATCAAAATCAGCACATGACA
AATGTGCCAACTGATCGGAGCACCTGCTTGAAAGAGAGCTCTGATAATGTGCATGGGGCAACAAACAGCTGTTTAAGCCA
CTGTAGCCAGACATTTCAACTCATGGTTGCATTGAAGCTTCTGATTTCAGGTGGCGCGGCAGCTCGAAAGCAATCAAATG
CTATCCATGACTGGAGATCCCTGCATCATCATTATATTAAGGAGGACAAGGATGATTCAGAAGCTCACTATCTTGATTGG
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis