Browse Element(s) Details


Os.37370.1.S1_at

Description gb:AK058949.1
DB_XREF= gi:32968967
TID=Os.37370.1
CNT=50
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.37370 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA, partial homologous to ATP-dependent protease gene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-A06, full insert sequence.
FL= gb:AK058949.1 gb:AK058510.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3256011/11ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32520OsAffx.3979.1.S1_at11/114+19389594..19391879hypothetical protein
LOC_Os04g32530OsAffx.3980.1.S1_at8/114+19395529..19397795hypothetical protein
LOC_Os04g32540Os.49108.2.S1_x_at10/114+19404504..19408114Serine carboxypeptidase family protein, expressed
LOC_Os04g32550Os.4650.1.S1_at10/114+19410796..19413447Defender against cell death 1, putative, expressed
LOC_Os04g32560Os.37370.1.S1_at11/114+19413897..19420445ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed
LOC_Os04g32570OsAffx.26564.1.S1_at11/114+19420993..19421784hypothetical protein
LOC_Os04g32580OsAffx.26288.1.S1_at11/114+19423109..19425313expressed protein
LOC_Os04g32580Os.20057.1.S1_at11/114+19423109..19425313expressed protein
LOC_Os04g32580OsAffx.24671.1.S1_s_at1/114+19423109..19425313expressed protein
LOC_Os04g32590Os.5371.1.S1_s_at11/114+19425396..19428386expressed protein
LOC_Os04g32590OsAffx.14098.1.S1_at11/114+19425396..19428386expressed protein
LOC_Os04g32600OsAffx.26289.1.S1_at10/114+19439893..19442461expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0009408biological_processresponse to heat
GO:0009658biological_processchloroplast organization and biogenesis
GO:0045037biological_processprotein import into chloroplast stroma
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37370.1.S1_at--393--8511Chr04:19414415..19414439 (25 bp)
TGGCACCTGCTCTGAGTGTCTAATT
LOC_Os04g32560
Os.37370.1.S1_at--699--991Chr04:19414388..19414412 (25 bp)
AGGATAATATCGTCGTTCTGGAATT
LOC_Os04g32560
Os.37370.1.S1_at--657--8511Chr04:19414370..19414394 (25 bp)
TGGAATTATGGCCTTTTCTCTTCTC
LOC_Os04g32560
Os.37370.1.S1_at--860--6231Chr04:19414315..19414339 (25 bp)
GATGGCATAAATTCTCCCTTCATTT
LOC_Os04g32560
Os.37370.1.S1_at--1122--9491Chr04:19414303..19414327 (25 bp)
TCTCCCTTCATTTAGGTGCTTTCAC
LOC_Os04g32560
Os.37370.1.S1_at--462--3871Chr04:19414202..19414226 (25 bp)
CTGTATGCTAGATCTTGAGTTGCTT
LOC_Os04g32560
Os.37370.1.S1_at--565--7971Chr04:19414165..19414189 (25 bp)
GGATGTCAGAAGCTTTACTCCTTCA
LOC_Os04g32560
Os.37370.1.S1_at--889--4871Chr04:19414154..19414178 (25 bp)
GCTTTACTCCTTCAAGTACGTGTAT
LOC_Os04g32560
Os.37370.1.S1_at--241--9831Chr04:19414106..19414130 (25 bp)
TAAACGCTGCACTGTTGTACCTGTA
LOC_Os04g32560
Os.37370.1.S1_at--66--1031Chr04:19414017..19414041 (25 bp)
AGGTAAATGCTACGGCATCCTGGCC
LOC_Os04g32560
Os.37370.1.S1_at--424--3911Chr04:19413998..19414022 (25 bp)
CTGGCCACCCAGCAGCATTAATATA
LOC_Os04g32560
Target Sequence 
TGGCACCTGCTCTGAGTGTCTAATTGAAGGATAATATCGTCGTTCTGGAATTATGGCCTTTTCTCTTCTCTCAGCTGGGG
CGCTCATGATGGTAAAACTAGATGGCATAAATTCTCCCTTCATTTAGGTGCTTTCACTTTTCCTCTTTTTTTCCAACAGA
GGCAGTAGGAATGTTATGGAAATGAATCAACAGAGATGCATTTAGCAAACAAACTGTATGCTAGATCTTGAGTTGCTTTT
ATTTTTAAAAGGATGTCAGAAGCTTTACTCCTTCAAGTACGTGTATTTNTTCTTTTGGTAGCAGTAAGATAAACGCTGCA
CTGTTGTACCTGTACATTACTTCGCACCAGATGGCTTCCAATACTTTTTACACATGGCTGTAACTTACTTTGAAGTGTAG
GTAAATGCTACGGCATCCTGGCCACCCAGCAGCATTAATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis