Browse Element(s) Details


OsAffx.22682.2.S1_at

Description tigr:9636.m01596
TID=OsAffx.22682.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1590011/11transposase related protein, putative
LOC_Os06g349102/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15880OsAffx.5831.1.S1_at11/118+9659514..9665037NB-ARC domain containing protein
LOC_Os08g15880OsAffx.29724.6.S1_x_at1/118+9659514..9665037NB-ARC domain containing protein
LOC_Os08g15890OsAffx.29226.1.S1_at11/118+9669992..9670865hypothetical protein
LOC_Os08g15900OsAffx.22682.2.S1_at11/118+9680143..9683670transposase related protein, putative
LOC_Os08g15900OsAffx.22682.1.S1_at1/118+9680143..9683670transposase related protein, putative
LOC_Os08g15900OsAffx.15500.1.S1_x_at1/118+9680143..9683670transposase related protein, putative
LOC_Os08g15900OsAffx.13264.1.S1_x_at1/118+9680143..9683670transposase related protein, putative
LOC_Os08g15910OsAffx.17017.1.S1_at11/118+9684823..9686198hypothetical protein
LOC_Os08g15920OsAffx.29227.1.S1_s_at11/118+9688891..9690586hypothetical protein
LOC_Os08g15920Os.38764.1.S1_x_at4/118+9688891..9690586hypothetical protein
LOC_Os08g15930OsAffx.5832.1.S1_at11/118+9697179..9697796hypothetical protein
LOC_Os08g15940NANA8+9698456..9699876transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g15950OsAffx.5833.1.S1_at10/118+9700957..9701941hypothetical protein
LOC_Os08g15960NANA8+9704610..9704942hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22682.2.S1_at--801--52Chr08:9683077..9683101 (25 bp)
ATTGACGCAGGGTTACACCTTGTTC
LOC_Os08g15900
OsAffx.22682.2.S1_at--838--571Chr08:9683167..9683191 (25 bp)
AGACGACGTTTGATTGGACCGAATA
LOC_Os08g15900
OsAffx.22682.2.S1_at--976--10151Chr08:9683207..9683231 (25 bp)
TATCTGGTAGGCACGCTGGTATATT
LOC_Os08g15900
OsAffx.22682.2.S1_at--569--2731Chr08:9683242..9683266 (25 bp)
AAGAATGAGATTCCAGGCCACCGAC
LOC_Os08g15900
OsAffx.22682.2.S1_at--403--10792Chr08:9683298..9683322 (25 bp)
TTGTGCTAACTTTTATACCGCTGGA
LOC_Os08g15900
OsAffx.22682.2.S1_at--115--9971Chr08:9683313..9683337 (25 bp)
TACCGCTGGAGCTACTCAGGATCAA
LOC_Os08g15900
OsAffx.22682.2.S1_at--669--1271Chr08:9683393..9683417 (25 bp)
AGATCAAGCGTCTCATGGGTTTGCT
LOC_Os08g15900
OsAffx.22682.2.S1_at--1061--2251Chr08:9683476..9683500 (25 bp)
AAATCATTTGATACCGATGGGCGTC
LOC_Os08g15900
OsAffx.22682.2.S1_at--838--6251Chr08:9683491..9683515 (25 bp)
GATGGGCGTCGTTACAGCTTTATGA
LOC_Os08g15900
OsAffx.22682.2.S1_at--167--6092Chr08:9683550..9683574 (25 bp)
GAGTAGCATTCGAAAACTGCCCATG
LOC_Os08g15900
OsAffx.22682.2.S1_at--1144--3511Chr08:9683571..9683595 (25 bp)
CATGACAGCTATTGTGGCGTACACA
LOC_Os08g15900
Target Sequence 
ATTGACGCAGGGTTACACCTTGTTCCTTTGGCGTTTGCCCTGGTAGAGAGGGAGAACACGTCCAACTGGGAGTGGTTCAT
TGACATAGTGAGACGACGTTTGATTGGACCGAATAGAGAAGTATGTATAATATCTGGTAGGCACGCTGGTATATTGAACT
CCATCAAGAATGAGATTCCAGGCCACCGACCTATTCACCACAGATGGTGCATGAGGCATTTTTGTGCTAACTTTTATACC
GCTGGAGCTACTCAGGATCAAATGAAGGACCTCGAGCGCATATGTCAAATCAACGAGAAAGTTCTATTCATAAGCGAGAT
CAAGCGTCTCATGGGTTTGCTTGGGGAAGGTCCTAAGAAATGGCTAACGAACAATATGACATTCAAGGCTAAATGGACCA
AATCATTTGATACCGATGGGCGTCGTTACAGCTTTATGACTAGTAATATGGCCGAGAGTTTCAACAATGTCTTGAGTAGC
ATTCGAAAACTGCCCATGACAGCTATTGTGGCGTACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22682.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis