Browse Element(s) Details


Os.28385.2.S1_a_at

Description gb:AK071885.1
DB_XREF= gi:32981908
TID=Os.28385.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28385 (NCBI UniGene Cluster)
UG_TITLE=MRNA for MAPK like protein, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013048E13, full insert sequence.
FL= gb:AK071885.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0230011/11mitogen-activated protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02240Os.1310.1.S1_a_at11/1111+629587..632625CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os11g02250OsAffx.19456.1.S1_at11/1111+640564..641001Zinc finger, C3HC4 type family protein
LOC_Os11g02260OsAffx.30781.2.S1_at11/1111+641580..641984Zinc finger, C3HC4 type family protein
LOC_Os11g02260OsAffx.30781.1.S1_s_at11/1111+641580..641984Zinc finger, C3HC4 type family protein
LOC_Os11g02270Os.50557.1.S1_at1/1111+646610..647878expressed protein
LOC_Os11g02280OsAffx.6965.1.S1_at11/1111+648831..649316hypothetical protein
LOC_Os11g02290Os.31991.1.S1_at11/1111+650479..651059expressed protein
LOC_Os11g02290Os.31991.1.S1_s_at11/1111+650479..651059expressed protein
LOC_Os11g02290Os.36558.1.S1_x_at5/1111+650479..651059expressed protein
LOC_Os11g02300Os.28385.1.S1_x_at11/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02300Os.28385.2.S1_a_at11/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02300Os.28385.3.S1_x_at2/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02300OsAffx.25784.1.S1_x_at2/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02320Os.21252.1.S1_at11/1111+662978..670704nucleotidyltransferase family protein, putative, expressed
LOC_Os11g02310OsAffx.23315.1.S1_s_at2/1111+670598..672211pentatricopeptide, putative
LOC_Os11g02330Os.37860.1.S1_at11/1111+679037..679892expressed protein
LOC_Os11g02330Os.57455.1.S1_x_at6/1111+679037..679892expressed protein
LOC_Os11g02340OsAffx.29227.2.S1_at10/1111+681453..683177hypothetical protein
LOC_Os11g02340OsAffx.29227.1.S1_s_at1/1111+681453..683177hypothetical protein
LOC_Os11g02350Os.4380.1.S1_at11/1111+683780..684610Nonspecific lipid-transfer protein 4 precursor, putative, expressed
LOC_Os11g02360OsAffx.6966.1.S1_at11/1111+685087..686482hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007623biological_processcircadian rhythm
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28385.2.S1_a_at--850--1111Chr11:654809..654833 (25 bp)
AGTGCAAGCAGCCTGCATCAGCAGC
LOC_Os11g02300
Os.28385.2.S1_a_at--926--2391Chr11:654435..654459 (25 bp)
AAACTTTTCAGAGCAACTTAATTTG
LOC_Os11g02300
Os.28385.2.S1_a_at--617--5951Chr11:654425..654449 (25 bp)
GAGCAACTTAATTTGCTACTCCATT
LOC_Os11g02300
Os.28385.2.S1_a_at--380--9751Chr11:654417..654441 (25 bp)
TAATTTGCTACTCCATTATGTACAG
LOC_Os11g02300
Os.28385.2.S1_a_at--57--10731Chr11:654413..654437 (25 bp)
TTGCTACTCCATTATGTACAGAGAA
LOC_Os11g02300
Os.28385.2.S1_a_at--894--1471Chr11:654392..654416 (25 bp)
AGAATCAGATGCAGAGTATTAGCCT
LOC_Os11g02300
Os.28385.2.S1_a_at--453--6071Chr11:654379..654403 (25 bp)
GAGTATTAGCCTCTGATAATGGATT
LOC_Os11g02300
Os.28385.2.S1_a_at--159--6471Chr11:654365..654389 (25 bp)
GATAATGGATTAGGGCCGTTCACTT
LOC_Os11g02300
Os.28385.2.S1_a_at--230--3671Chr11:654343..654367 (25 bp)
CTTTGATGCCACTTTGAACCTTACT
LOC_Os11g02300
Os.28385.2.S1_a_at--1125--8851Chr11:654340..654364 (25 bp)
TGATGCCACTTTGAACCTTACTAAA
LOC_Os11g02300
Os.28385.2.S1_a_at--648--9151Chr11:654337..654361 (25 bp)
TGCCACTTTGAACCTTACTAAATTT
LOC_Os11g02300
Target Sequence 
AGTGCAAGCAGCCTGCATCAGCAGCAGCAGCATTGCTCGGCCTCTTCCAGCAGATTGGGGCCAGCATCTGCATCTGCATC
TGAAGACGGAGGAGGAGGACACGCCGGACGGCCACGGCAGCGAGAGGGGGAGGAGGAGCGGCGGCGGCGGAGGATGAGTC
GGAACAGGTCCATGGTGGACATGCGGAGCCAGCTGCTGCACCGGACGTTGGTGGAGGAGCTCAACAAGCGCCTCTTCTTC
AACACCGTCGGCGCCGTCCACGACATCGGCTTCCGCGACCCTACTGCTGCTGCTTCTTCTTCCTCTAGCTCTTCCCACCA
CCGCCGGAGAAGCAGCAACAAGATCGACCACAAGCACCACTACATGTTCTGAATAAACTTTTCAGAGCAACTTAATTTGC
TACTCCATTATGTACAGAGAATCAGATGCAGAGTATTAGCCTCTGATAATGGATTAGGGCCGTTCACTTTGATGCCACTT
TGAACCTTACTAAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28385.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis