Browse Element(s) Details


Os.36558.1.S1_x_at

Description gb:AK063119.1
DB_XREF= gi:32973137
TID=Os.36558.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-E05, full insert sequence.
FL= gb:AK063119.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g022405/11hypothetical protein
LOC_Os11g022905/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02180OsAffx.19454.1.S1_at4/1112+673082..675628hypothetical protein
LOC_Os12g02200Os.1310.1.S1_a_at11/1112+678079..681269CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os12g02210OsAffx.19456.1.S1_at11/1112+689489..689935Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g02220OsAffx.30781.1.S1_s_at11/1112+690573..690998Zinc finger, C3HC4 type family protein
LOC_Os12g02230Os.50557.1.S1_at11/1112+691719..693613expressed protein
LOC_Os12g02240Os.31991.1.S1_s_at5/1112+695945..696244hypothetical protein
LOC_Os12g02240Os.36558.1.S1_x_at5/1112+695945..696244hypothetical protein
LOC_Os12g02250Os.28385.3.S1_x_at10/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02250Os.28385.3.S1_at10/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02250OsAffx.25784.1.S1_x_at1/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02250Os.28385.1.S1_x_at1/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02260Os.21252.1.S1_at7/1112+706649..712432nucleotidyltransferase family protein, putative, expressed
LOC_Os12g02270NANA12+715285..716766hypothetical protein
LOC_Os12g02280Os.53038.1.S1_at11/1112+717524..721185pentatricopeptide, putative, expressed
LOC_Os12g02280OsAffx.23315.1.S1_s_at3/1112+717524..721185pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36558.1.S1_x_at--1075--9252Chr12:695895..695919 (25 bp)
TCCTCTGCAAATCCATCCATATTAG
NONE
Os.36558.1.S1_x_at--102--992Chr12:695931..695955 (25 bp)
AGGAGATCACAACAATGGCCACATT
NONE
Os.36558.1.S1_x_at--1095--2952Chr12:695944..695968 (25 bp)
AATGGCCACATTGCTATTGTCAAGC
NONE
Os.36558.1.S1_x_at--728--2452Chr12:695969..695993 (25 bp)
AACAAGAAGCCCTGCAGCTCGTCGT
LOC_Os12g02240
Os.36558.1.S1_x_at--92--6331Chr12:696088..696112 (25 bp)
GATGCAGCCACAGCTGAAGCACGAA
LOC_Os12g02240
Os.36558.1.S1_x_at--917--5092Chr12:696106..696130 (25 bp)
GCACGAATCGGAGACAGCATCAGCA
LOC_Os12g02240
Os.36558.1.S1_x_at--818--1531Chr12:696121..696145 (25 bp)
AGCATCAGCAGATACGACGACGACG
LOC_Os12g02240
Os.36558.1.S1_x_at--492--3412Chr12:696164..696188 (25 bp)
CAGCAGCAGCTGTCTTGGTTGAGAA
LOC_Os12g02240
Os.36558.1.S1_x_at--614--10451Chr12:696246..696270 (25 bp)
TTAGCTAGCTACTCGTATTTGCCCT
NONE
Os.36558.1.S1_x_at--888--9311Chr12:696278..696302 (25 bp)
TCCCTCCTCTGTAGGCTTTCTATCT
NONE
Os.36558.1.S1_x_at--840--10811Chr12:696455..696479 (25 bp)
TTGGTTTCCCCTGCAGTTTTCTGAA
NONE
Target Sequence 
TCCTCTGCAAATCCATCCATATTAGNCTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAA
GAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTT
GCAGCAGGCCTCTGCCTCTTCCGTCGCCGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGAT
ACGACGACGACGACTGAAGAACAAGTGATGCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACA
GCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGC
TTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTT
CGATATACAGAAACTATGTACATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTATTC
TTTGGTTTCCCCTGCAGTTTTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36558.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis