Browse Element(s) Details


Os.53038.1.S1_at

Description gb:AK070552.1
DB_XREF= gi:32980576
TID=Os.53038.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53038 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023062N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062N08, full insert sequence.
FL= gb:AK070552.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0228011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02230Os.50557.1.S1_at11/1112+691719..693613expressed protein
LOC_Os12g02240Os.31991.1.S1_s_at5/1112+695945..696244hypothetical protein
LOC_Os12g02240Os.36558.1.S1_x_at5/1112+695945..696244hypothetical protein
LOC_Os12g02250Os.28385.3.S1_x_at10/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02250Os.28385.3.S1_at10/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02250OsAffx.25784.1.S1_x_at1/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02250Os.28385.1.S1_x_at1/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02260Os.21252.1.S1_at7/1112+706649..712432nucleotidyltransferase family protein, putative, expressed
LOC_Os12g02270NANA12+715285..716766hypothetical protein
LOC_Os12g02280Os.53038.1.S1_at11/1112+717524..721185pentatricopeptide, putative, expressed
LOC_Os12g02280OsAffx.23315.1.S1_s_at3/1112+717524..721185pentatricopeptide, putative, expressed
LOC_Os12g02290Os.28462.1.S1_s_at11/1112+722133..723250Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os12g02290Os.57455.1.S1_x_at1/1112+722133..723250Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os12g02300Os.4380.1.S1_at11/1112+726802..727637Nonspecific lipid-transfer protein 4 precursor, putative, expressed
LOC_Os12g02310Os.10615.1.S1_x_at11/1112+732190..733084Nonspecific lipid-transfer protein 2 precursor, putative, expressed
LOC_Os12g02310Os.10615.1.S1_s_at11/1112+732190..733084Nonspecific lipid-transfer protein 2 precursor, putative, expressed
LOC_Os12g02320Os.8629.1.S1_x_at9/1112+736313..737282Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os12g02330Os.36779.1.S1_s_at11/1112+745162..746120Nonspecific lipid-transfer protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53038.1.S1_at--1134--771Chr12:720697..720721 (25 bp)
ATGTGCATGCGAGGTTTTATCTGAC
LOC_Os12g02280
Os.53038.1.S1_at--19--4872Chr12:720762..720786 (25 bp)
GCTAGGCGACGTCTCTGGATGAATT
LOC_Os12g02280
Os.53038.1.S1_at--737--10492Chr12:720785..720809 (25 bp)
TTAATGGATCGATCAGGTTGCTGCA
LOC_Os12g02280
Os.53038.1.S1_at--339--911Chr12:720809..720833 (25 bp)
AGGCTGCTATAGCTCTGCACCAGGA
LOC_Os12g02280
Os.53038.1.S1_at--794--8091Chr12:720831..720855 (25 bp)
GGACCAAGCACTGCACATTACTGTA
LOC_Os12g02280
Os.53038.1.S1_at--153--9931Chr12:720849..720873 (25 bp)
TACTGTATCTGTATGGTCACACTGA
LOC_Os12g02280
Os.53038.1.S1_at--457--4592Chr12:720889..720913 (25 bp)
GCGAAGTAGCTGCTGATCCATCTGC
LOC_Os12g02280
Os.53038.1.S1_at--536--572Chr12:720904..720928 (25 bp)
ATCCATCTGCCCAATCGATAGGCTA
LOC_Os12g02280
Os.53038.1.S1_at--967--6572Chr12:720968..720992 (25 bp)
GATTCCTTCAACAGTGGAGTACCCA
LOC_Os12g02280
Os.53038.1.S1_at--675--72Chr12:720992..721016 (25 bp)
ATTGCTCTGTTTGCCCACAGATGGA
LOC_Os12g02280
Os.53038.1.S1_at--605--4772Chr12:721023..721047 (25 bp)
GCTGCGTGTCAAATGTCAATCTTTC
LOC_Os12g02280
Target Sequence 
ATGTGCATGCGAGGTTTTATCTGACCTATCGAGATGAGGATCAAATGAACAGAGTAGTATACGTTGCTAGGCGACGTCTC
TGGATGAATTAATGGATCGATCAGGTTGCTGCAGGCTGCTATAGCTCTGCACCAGGACCAAGCACTGCACATTACTGTAT
CTGTATGGTCACACTGATGAAAGGAGAAATTTGCGAAGTAGCTGCTGATCCATCTGCCCAATCGATAGGCTACAAATAAA
TGAAGCTGGTAGCTTTCATTCAATAAATATGGATTCCTTCAACAGTGGAGTACCCATTGCTCTGTTTGCCCACAGATGGA
ATTGAAGCTGCGTGTCAAATGTCAATCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis