Browse Element(s) Details


Os.28462.1.S1_s_at

Description gb:AF051369.1
DB_XREF= gi:3172342
TID=Os.28462.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28462 (NCBI UniGene Cluster)
DEF=Oryza sativa lipid transfer protein mRNA, complete cds.
PROD=lipid transfer protein
FL= gb:AF051369.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0229011/11Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os02g247201/11Nonspecific lipid-transfer protein 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02250Os.28385.3.S1_x_at10/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02250Os.28385.3.S1_at10/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02250OsAffx.25784.1.S1_x_at1/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02250Os.28385.1.S1_x_at1/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02260Os.21252.1.S1_at7/1112+706649..712432nucleotidyltransferase family protein, putative, expressed
LOC_Os12g02270NANA12+715285..716766hypothetical protein
LOC_Os12g02280Os.53038.1.S1_at11/1112+717524..721185pentatricopeptide, putative, expressed
LOC_Os12g02280OsAffx.23315.1.S1_s_at3/1112+717524..721185pentatricopeptide, putative, expressed
LOC_Os12g02290Os.28462.1.S1_s_at11/1112+722133..723250Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os12g02290Os.57455.1.S1_x_at1/1112+722133..723250Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os12g02300Os.4380.1.S1_at11/1112+726802..727637Nonspecific lipid-transfer protein 4 precursor, putative, expressed
LOC_Os12g02310Os.10615.1.S1_x_at11/1112+732190..733084Nonspecific lipid-transfer protein 2 precursor, putative, expressed
LOC_Os12g02310Os.10615.1.S1_s_at11/1112+732190..733084Nonspecific lipid-transfer protein 2 precursor, putative, expressed
LOC_Os12g02320Os.8629.1.S1_x_at9/1112+736313..737282Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os12g02330Os.36779.1.S1_s_at11/1112+745162..746120Nonspecific lipid-transfer protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006649biological_processphospholipid transfer to membrane
GO:0006869biological_processlipid transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005618cellular_componentcell wall
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005516molecular_functioncalmodulin binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28462.1.S1_s_at--873--7772Chr12:722864..722888 (25 bp)
GGTGCACTGAGTGGATCAACGTCAA
LOC_Os12g02290
Os.28462.1.S1_s_at--76--8571Chr12:722875..722899 (25 bp)
TGGATCAACGTCAAGTGATGCCACA
LOC_Os12g02290
Os.28462.1.S1_s_at--236--6251Chr12:722913..722937 (25 bp)
GATGGATCCATCGATCTGCGGCTCT
LOC_Os12g02290
Os.28462.1.S1_s_at--966--9131Chr12:722929..722953 (25 bp)
TGCGGCTCTCATTTTGCGGTTGCTA
LOC_Os12g02290
Os.28462.1.S1_s_at--25--9071Chr12:722949..722973 (25 bp)
TGCTATCTGCAATATTCGTCGTCGT
LOC_Os12g02290
Os.28462.1.S1_s_at--579--10031Chr12:722988..723012 (25 bp)
TAGAAATGCATGTTACTCCTCCGTT
LOC_Os12g02290
Os.28462.1.S1_s_at--714--10471Chr12:723000..723024 (25 bp)
TTACTCCTCCGTTCTGTTACTATCT
LOC_Os12g02290
Os.28462.1.S1_s_at--835--6771Chr12:723015..723039 (25 bp)
GTTACTATCTGCTTACCTGTTGCTT
LOC_Os12g02290
Os.28462.1.S1_s_at--954--7671Chr12:723085..723109 (25 bp)
GGGTTGATTTTGATCTGTCTCCTTT
LOC_Os12g02290
Os.28462.1.S1_s_at--787--471Chr12:723097..723121 (25 bp)
ATCTGTCTCCTTTACGGGACGAGGG
LOC_Os12g02290
Os.28462.1.S1_s_at--1023--3051Chr12:723129..723153 (25 bp)
AATCATGCATGAATCTTAGAGGACC
LOC_Os12g02290
Target Sequence 
GGTGCACTGAGTGGATCAACGTCAAGTGATGCCACAATAATAATGGAGAGATGGATCCATCGATCTGCGGCTCTCATTTT
GCGGTTGCTATCTGCAATATTCGTCGTCGTCGGAGAGATCGAGCTAGAAATGCATGTTACTCCTCCGTTCTGTTACTATC
TGCTTACCTGTTGCTTCGTGCGGTTTGATAGTGTCGTTATAGCTAGTGTAAGAGTGTGAGGGTTGATTTTGATCTGTCTC
CTTTACGGGACGAGGGGCACGGCGAATCATGCATGAATCTTAGAGGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28462.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis