Browse Element(s) Details


Os.8629.1.S1_x_at

Description gb:AF017360.1
DB_XREF= gi:2407274
TID=Os.8629.1
CNT=93
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.8629 (NCBI UniGene Cluster)
DEF=Oryza sativa lipid transfer protein LPT III mRNA, complete cds.
PROD=lipid transfer protein LPT III
FL= gb:AK059808.1 gb:U77295.1 gb:AF017360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g023209/11Nonspecific lipid-transfer protein 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02260Os.21252.1.S1_at7/1112+706649..712432nucleotidyltransferase family protein, putative, expressed
LOC_Os12g02270NANA12+715285..716766hypothetical protein
LOC_Os12g02280Os.53038.1.S1_at11/1112+717524..721185pentatricopeptide, putative, expressed
LOC_Os12g02280OsAffx.23315.1.S1_s_at3/1112+717524..721185pentatricopeptide, putative, expressed
LOC_Os12g02290Os.28462.1.S1_s_at11/1112+722133..723250Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os12g02290Os.57455.1.S1_x_at1/1112+722133..723250Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os12g02300Os.4380.1.S1_at11/1112+726802..727637Nonspecific lipid-transfer protein 4 precursor, putative, expressed
LOC_Os12g02310Os.10615.1.S1_x_at11/1112+732190..733084Nonspecific lipid-transfer protein 2 precursor, putative, expressed
LOC_Os12g02310Os.10615.1.S1_s_at11/1112+732190..733084Nonspecific lipid-transfer protein 2 precursor, putative, expressed
LOC_Os12g02320Os.8629.1.S1_x_at9/1112+736313..737282Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os12g02330Os.36779.1.S1_s_at11/1112+745162..746120Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os12g02340Os.10120.1.S2_a_at6/1112+759919..761440Nonspecific lipid-transfer protein 3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006649biological_processphospholipid transfer to membrane
GO:0006869biological_processlipid transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005618cellular_componentcell wall
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005516molecular_functioncalmodulin binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8629.1.S1_x_at--354--2711Chr12:736594..736618 (25 bp)
AAGCACGACCGCAGACCGGCGCACC
LOC_Os12g02320
Os.8629.1.S1_x_at--528--7351Chr12:736886..736909 (24 bp)
GTGAGCTGAGCCATCGATCAGAGAG
LOC_Os12g02320
Os.8629.1.S1_x_at--972--8911Chr12:736887..736909 (23 bp)
TGAGCTGAGCCATCGATCAGAGAGA
LOC_Os12g02320
Os.8629.1.S1_x_at--499--9391NONE
TCGATCAGAGAGACGGATCATATAT
NONE
Os.8629.1.S1_x_at--486--391Chr12:736905..736924 (20 bp)
ATCAGAGAGACGGATCATATATATA
LOC_Os12g02320
Os.8629.1.S1_x_at--912--4471Chr12:736934..736957 (24 bp)
GCCGGTTGCCACCTAGTAGATTCTT
LOC_Os12g02320
Os.8629.1.S1_x_at--560--3371NONE
CACCTAGTAGATTCTTGCCTGGGTC
NONE
Os.8629.1.S1_x_at--277--6911Chr12:736987..737011 (25 bp)
GTATCCAGTACTAGTAGTATCATAT
LOC_Os12g02320
Os.8629.1.S1_x_at--571--4351Chr12:736991..737015 (25 bp)
CCAGTACTAGTAGTATCATATCTGT
LOC_Os12g02320
Os.8629.1.S1_x_at--436--1571Chr12:737034..737058 (25 bp)
AGCTAGCTAAGGTCTCGATCAATCA
LOC_Os12g02320
Os.8629.1.S1_x_at--1080--5771Chr12:737075..737099 (25 bp)
GATCGGCCCGGTCACGCTAGCTAGC
LOC_Os12g02320
Target Sequence 
AAGCACGACCGCAGACCGGCGCACCGCCTGCAACTGCCTCAAGAACGCGGCCCGCGGCATCAAGGGGCTCAACGCCGGCA
ACGCCGCCAGCATCCCCTCCAAGTGCGGCGTCAGCGTCCCCTACACCATCAGCGCTTCCATCGACTGCTCCAGGGTGAGC
TGAGCCATCGATCAGAGAGACGGATCATATATATACAGCAGCGCGCCGGTTGCCACCTAGTAGATTCTTGCCTGGGTCNG
ATGTGTGGAGCCGAATTCTGTATCCAGTACTAGTAGTATCATATCTGTATTCTGGAATAAAAGATGAGCTAGCTAAGGTC
TCGATCAATCACCATGCATGCATGTGTGTGCATCCATGGTTGATCGGCCCGGTCACGCTAGCTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8629.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis