Browse Element(s) Details


Os.57455.1.S1_x_at

Description gb:D10955.1
DB_XREF= gi:218106
TID=Os.57455.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57455 (NCBI UniGene Cluster)
UG_TITLE=MRNA for phospholipid trasfer protein
DEF=Oryza sativa mRNA for phospholipid trasfer protein.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g023306/11expressed protein
LOC_Os12g022901/11Nonspecific lipid-transfer protein 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02300Os.28385.1.S1_x_at11/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02300Os.28385.2.S1_a_at11/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02300Os.28385.3.S1_x_at2/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02300OsAffx.25784.1.S1_x_at2/1111+654101..660239mitogen-activated protein kinase, putative, expressed
LOC_Os11g02320Os.21252.1.S1_at11/1111+662978..670704nucleotidyltransferase family protein, putative, expressed
LOC_Os11g02310OsAffx.23315.1.S1_s_at2/1111+670598..672211pentatricopeptide, putative
LOC_Os11g02330Os.37860.1.S1_at11/1111+679037..679892expressed protein
LOC_Os11g02330Os.57455.1.S1_x_at6/1111+679037..679892expressed protein
LOC_Os11g02340OsAffx.29227.2.S1_at10/1111+681453..683177hypothetical protein
LOC_Os11g02340OsAffx.29227.1.S1_s_at1/1111+681453..683177hypothetical protein
LOC_Os11g02350Os.4380.1.S1_at11/1111+683780..684610Nonspecific lipid-transfer protein 4 precursor, putative, expressed
LOC_Os11g02360OsAffx.6966.1.S1_at11/1111+685087..686482hypothetical protein
LOC_Os11g02379Os.10615.1.S1_s_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.10255.1.S1_s_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.27520.1.S1_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.38269.1.S1_x_at10/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.27520.2.S1_x_at9/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.10615.1.S1_x_at3/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.51910.1.S1_x_at1/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006649biological_processphospholipid transfer to membrane
GO:0006869biological_processlipid transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005618cellular_componentcell wall
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005516molecular_functioncalmodulin binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57455.1.S1_x_at--131--2732Chr12:722618..722642 (25 bp)
AAGCAGCAGACCAGCGCCATGGGCG
LOC_Os12g02290
Os.57455.1.S1_x_at--382--1791Chr11:679460..679590 (25 bp)
ACCGACTGCTCCAGGGTGCACTGAT
LOC_Os11g02330
Os.57455.1.S1_x_at--9--5731Chr11:679463..679593 (25 bp)
GACTGCTCCAGGGTGCACTGATGAG
LOC_Os11g02330
Os.57455.1.S1_x_at--435--3471Chr11:679577..679601 (25 bp)
CAGGGTGCACTGATGAGCGGATCAA
LOC_Os11g02330
Os.57455.1.S1_x_at--507--6311Chr11:679588..679612 (25 bp)
GATGAGCGGATCAACGTCGACAAGT
LOC_Os11g02330
Os.57455.1.S1_x_at--966--3251Chr11:679599..679623 (25 bp)
CAACGTCGACAAGTGATGCGACAAT
LOC_Os11g02330
Os.57455.1.S1_x_at--995--191NONE
ATTTCGCGGGTTGCTATGTACATGC
NONE
Os.57455.1.S1_x_at--349--6671NONE
GTTGCTATGTACATGCGACCGTTGG
NONE
Os.57455.1.S1_x_at--60--9071NONE
TGCTATGTACATGCGACCGTTGGTT
NONE
Os.57455.1.S1_x_at--886--4231NONE
CCGTTGGTTTAATGGTCGAGCTTAG
NONE
Os.57455.1.S1_x_at--633--7871NONE
GGTTTAATGGTCGAGCTTAGAAATA
NONE
Target Sequence 
AAGCAGCAGACCAGCGCCATGGGCGGCCTGAGGNCCGACCTCGTCGNCGGCATCCCCTCCAAGTGCGACGTCAACATCCC
CTACGGCATCAGCCCTTCCACCGACTGCTCCAGGGTGCACTGATGAGCGGATCAACGTCGACAAGTGATGCGACAATANT
AAAGGNGAGATCGATCCATCGATCTCCAANCTCTNATTTCGCGGGTTGCTATGTACATGCGACCGTTGGTTTAATGGTCG
AGCTTAGAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57455.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis