Browse Element(s) Details


Os.10255.1.S1_s_at

Description gb:AK060977.1
DB_XREF= gi:32970995
TID=Os.10255.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1110C07.13 (B1110C07.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-202-F05, full insert sequence.
FL= gb:AK060977.1 gb:AK063461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3735011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os11g0237911/11Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os12g085649/11expressed protein
LOC_Os10g038507/11F-box domain containing protein, expressed
LOC_Os09g039602/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37310OsAffx.25860.2.S1_x_at11/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37310OsAffx.25860.1.S1_x_at7/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37310Os.12304.1.S1_at4/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37320OsAffx.25860.5.S1_at10/111+21157114..21161911hypothetical protein
LOC_Os01g37320Os.12304.1.S1_at3/111+21157114..21161911hypothetical protein
LOC_Os01g37340OsAffx.8279.1.S1_at1/111+21173458..21175065retrotransposon protein, putative, unclassified
LOC_Os01g37340OsAffx.7789.1.S1_x_at1/111+21173458..21175065retrotransposon protein, putative, unclassified
LOC_Os01g37340Os.45161.1.A1_x_at1/111+21173458..21175065retrotransposon protein, putative, unclassified
LOC_Os01g37350Os.52731.1.S1_at11/111+21176596..21184072retrotransposon protein, putative, unclassified, expressed
LOC_Os01g37350Os.10255.1.S1_s_at11/111+21176596..21184072retrotransposon protein, putative, unclassified, expressed
LOC_Os01g37350Os.38269.1.S1_x_at4/111+21176596..21184072retrotransposon protein, putative, unclassified, expressed
LOC_Os01g37350OsAffx.22699.1.S1_x_at1/111+21176596..21184072retrotransposon protein, putative, unclassified, expressed
LOC_Os01g37360Os.27066.1.A1_x_at11/111+21184201..21187401hypothetical protein
LOC_Os01g37370NANA1+21193345..21193716hypothetical protein
LOC_Os01g37380Os.27358.1.S1_at10/111+21196811..21199694transposon protein, putative, Mutator sub-class
LOC_Os01g37390NANA1+21203124..21204335hypothetical protein
LOC_Os01g37400NANA1+21205428..21207409retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006649biological_processphospholipid transfer to membrane
GO:0006869biological_processlipid transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005618cellular_componentcell wall
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005516molecular_functioncalmodulin binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10255.1.S1_s_at--1101--3814Chr12:4337327..4337351 (25 bp)
CTGCCTCGCTCGGTAACGGGCGAGA
LOC_Os12g08564
Os.10255.1.S1_s_at--806--136Chr12:23953180..23953204 (25 bp)
ATTAGCGCACAGTAATCCTATCCCT
NONE
Os.10255.1.S1_s_at--1058--3296Chr12:23953189..23953213 (25 bp)
CAGTAATCCTATCCCTAACGGTGAT
NONE
Os.10255.1.S1_s_at--286--9814Chr12:4337424..4337448 (25 bp)
TAACGGTGATTATCCCACTCAATGG
LOC_Os12g08564
Os.10255.1.S1_s_at--932--8814Chr12:4337430..4337454 (25 bp)
TGATTATCCCACTCAATGGCAGGTG
LOC_Os12g08564
Os.10255.1.S1_s_at--159--674Chr12:4337505..4337529 (25 bp)
ATGACAGGCGGGACCCAATGGTAAT
LOC_Os12g08564
Os.10255.1.S1_s_at--1134--8094Chr12:4337515..4337539 (25 bp)
GGACCCAATGGTAATTAAACAAGCA
LOC_Os12g08564
Os.10255.1.S1_s_at--955--2455Chr12:23953312..23953336 (25 bp)
AACAAGCAGGTTTGACCCTAAGTCA
NONE
Os.10255.1.S1_s_at--985--8696Chr12:23953323..23953347 (25 bp)
TTGACCCTAAGTCAACCAGGGCCGG
NONE
Os.10255.1.S1_s_at--735--3977Chr12:23953345..23953369 (25 bp)
CGGTCCCACATGTCAACCACAGTGG
NONE
Os.10255.1.S1_s_at--260--1717Chr12:23953360..23953384 (25 bp)
ACCACAGTGGGTTTTGGATAATGTT
NONE
Target Sequence 
CTGCCTCGCTCGGTAACGGGCGAGAGGAAGAAGAAGATGAGGAGAGAGAGAAACCGTGTGGGACCCACATGTGATTAGCG
CACAGTAATCCTATCCCTAACGGTGATTATCCCACTCAATGGCAGGTGGGGTCCCTATAGTTAAAATCTAAGAAAACACA
ATTATATATTTTGTTCCTATGACAGGCGGGACCCAATGGTAATTAAACAAGCAGGTTTGACCCTAAGTCAACCAGGGCCG
GTCCCACATGTCAACCACAGTGGGTTTTGGATAATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10255.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis