Browse Element(s) Details


Os.12304.1.S1_at

Description gb:AU077676
DB_XREF= gi:5667434
DB_XREF=AU077676
CLONE=E40912_6Z
TID=Os.12304.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.12304 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3948011/11transposon protein, putative, unclassified
LOC_Os06g425209/11transposon protein, putative, unclassified
LOC_Os06g424209/11transposon protein, putative, unclassified
LOC_Os03g124906/11transposon protein, putative, unclassified
LOC_Os04g044004/11FAR1 family protein
LOC_Os01g373104/11SWIM zinc finger family protein
LOC_Os01g373203/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39460Os.47463.1.S1_x_at4/115+23064154..23067854transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g39460Os.14491.2.S1_x_at4/115+23064154..23067854transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g39470Os.27037.1.A1_at1/115+23069436..23072234transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g39480Os.12304.1.S1_at11/115+23084945..23089060transposon protein, putative, unclassified
LOC_Os05g39480OsAffx.25860.1.S1_x_at11/115+23084945..23089060transposon protein, putative, unclassified
LOC_Os05g39480OsAffx.25860.2.S1_x_at5/115+23084945..23089060transposon protein, putative, unclassified
LOC_Os05g39490OsAffx.25860.5.S1_at4/115+23089939..23093380hypothetical protein
LOC_Os05g39500OsAffx.27237.1.S1_x_at11/115+23095019..23095735expressed protein
LOC_Os05g39510OsAffx.27238.1.S1_at7/115+23101807..23103229hypothetical protein
LOC_Os05g39510OsAffx.9699.1.S1_at2/115+23101807..23103229hypothetical protein
LOC_Os05g39520Os.34987.1.A1_a_at11/115+23107448..23111951dehydration-responsive protein, putative, expressed
LOC_Os05g39530Os.27722.1.S1_at10/115+23112962..23118253ribonuclease P family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009585biological_processred, far-red light phototransduction
GO:0009639biological_processresponse to red or far red light
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12304.1.S1_at--562--7297Chr08:1212279..1212298 (20 bp)
GTGCGTTGCATGGATACTGCTGCCC
NONE
Os.12304.1.S1_at--992--3836Chr06:25573741..25573765 (25 bp)
CTGCTGCCCGGAGTGAAGTGATGAA
LOC_Os06g42520
Os.12304.1.S1_at--1133--8994Chr06:25573754..25573777 (24 bp)
TGAAGTGATGAACCACTCTCTCCAG
LOC_Os06g42520
Os.12304.1.S1_at--467--7134Chr06:25573785..25573809 (25 bp)
GTCATTCATTTCGATGGATGTCATC
LOC_Os06g42520
Os.12304.1.S1_at--136--577Chr08:1212356..1212380 (25 bp)
ATCCTCTTCCCATGAGAAATCCTAG
NONE
Os.12304.1.S1_at--1024--1992Chr05:23085388..23085412 (25 bp)
ACTCCGTGATATTCGCGTGGCTTGC
LOC_Os05g39480
Os.12304.1.S1_at--437--5534Chr06:25573899..25573923 (25 bp)
GAAACAACCCGGGTCAACAGTAATG
LOC_Os06g42520
Os.12304.1.S1_at--640--2973Chr06:25573920..25573944 (25 bp)
AATGGTTGCGAACATGTGTCCAATG
LOC_Os06g42520
Os.12304.1.S1_at--225--10734Chr06:25573993..25574017 (25 bp)
TTGCTTTCTGCACGGTCGTAGATTA
LOC_Os06g42520
Os.12304.1.S1_at--386--6556Chr06:25574013..25574036 (24 bp)
GATTAGTCGTACGAACTGTCTCTAG
LOC_Os06g42520
Os.12304.1.S1_at--468--3051Chr05:23085624..23085648 (25 bp)
AATCTGTATCTTCTACTGTTTGGGA
LOC_Os05g39480
Target Sequence 
GTGCGTTGCATGGATACTGCTGCCCGGAGTGAAGTGATGAACCACTCTCTCCAGAAATATGTCATTCATTTCGATGGATG
TCATCCTCTTCCCATGAGAAATCCTAGGAAGAGATGCGCTTGGTGNCTCACTCCGTGATATTCGCGTGGCTTGCNGACAT
GAATTTCAGAAGCAACGAAACAACCCGGGTCAACAGTAATGGTTGCGAACATGTGTCCAATGAAAATATGTAGACAATAG
TGTGATGATCAGGAAAATTGTAATAAGGGCTTGCTTTCTGCACGGTCGTAGATTAGTCGTACGAACTGTCTCTAGTTTTG
TATGGTATTTTCTATGAGGAAAAAGCGAGTAGTATCTAAGTTTAGAAATCTGTATCTTCTACTGTTTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis