Browse Element(s) Details


OsAffx.27237.1.S1_x_at

Description tigr:9633.m03677
TID=OsAffx.27237.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3950011/11expressed protein
LOC_Os05g280401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39470Os.27037.1.A1_at1/115+23069436..23072234transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g39480Os.12304.1.S1_at11/115+23084945..23089060transposon protein, putative, unclassified
LOC_Os05g39480OsAffx.25860.1.S1_x_at11/115+23084945..23089060transposon protein, putative, unclassified
LOC_Os05g39480OsAffx.25860.2.S1_x_at5/115+23084945..23089060transposon protein, putative, unclassified
LOC_Os05g39490OsAffx.25860.5.S1_at4/115+23089939..23093380hypothetical protein
LOC_Os05g39500OsAffx.27237.1.S1_x_at11/115+23095019..23095735expressed protein
LOC_Os05g39510OsAffx.27238.1.S1_at7/115+23101807..23103229hypothetical protein
LOC_Os05g39510OsAffx.9699.1.S1_at2/115+23101807..23103229hypothetical protein
LOC_Os05g39520Os.34987.1.A1_a_at11/115+23107448..23111951dehydration-responsive protein, putative, expressed
LOC_Os05g39530Os.27722.1.S1_at10/115+23112962..23118253ribonuclease P family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27237.1.S1_x_at--23--5112Chr05:23095201..23095225 (25 bp)
GCACGTCATCGAGTTCCTCAAGTAC
LOC_Os05g39500
OsAffx.27237.1.S1_x_at--342--7711Chr05:23095262..23095286 (25 bp)
GGGTGCGCCTACTACGGCCAGCCGA
LOC_Os05g39500
OsAffx.27237.1.S1_x_at--803--4211Chr05:23095362..23095386 (25 bp)
CCGCCTACGAGGAGAGCGGCCACGC
LOC_Os05g39500
OsAffx.27237.1.S1_x_at--418--2931Chr05:23095457..23095481 (25 bp)
AAGGCCCGCGGGATACCATACGAGA
LOC_Os05g39500
OsAffx.27237.1.S1_x_at--688--871Chr05:23095458..23095482 (25 bp)
AGGCCCGCGGGATACCATACGAGAA
LOC_Os05g39500
OsAffx.27237.1.S1_x_at--562--4531Chr05:23095460..23095484 (25 bp)
GCCCGCGGGATACCATACGAGAAGA
LOC_Os05g39500
OsAffx.27237.1.S1_x_at--69--4671Chr05:23095464..23095488 (25 bp)
GCGGGATACCATACGAGAAGAAGAA
LOC_Os05g39500
OsAffx.27237.1.S1_x_at--127--3411Chr05:23095608..23095632 (25 bp)
CAGCAGAAGGCAGTGGCAGCTCCGC
LOC_Os05g39500
OsAffx.27237.1.S1_x_at--1147--5291Chr05:23095613..23095637 (25 bp)
GAAGGCAGTGGCAGCTCCGCCGCCG
LOC_Os05g39500
OsAffx.27237.1.S1_x_at--775--4211Chr05:23095644..23095668 (25 bp)
CCGCCACTAGCCAGACAGGAGGAGG
LOC_Os05g39500
OsAffx.27237.1.S1_x_at--740--4171Chr05:23095645..23095669 (25 bp)
CGCCACTAGCCAGACAGGAGGAGGA
LOC_Os05g39500
Target Sequence 
GCACGTCATCGAGTTCCTCAAGTACCTGGATCAGTTCGGGAAGACGAAGGTGCACGCGTCGGGGTGCGCCTACTACGGCC
AGCCGAGCCCGCCGGCGCCGTGCCCGTGCCCGCTGCGCCAGGCGTGGGGGTCCCTCGACGCGCTCATCGGGCGCCTCCGC
GCCGCCTACGAGGAGAGCGGCCACGCGCCGGAGTCCAACCCCTTCGCCGCGCGCGCCGTCCGGATCTACCTCCGCGAGGT
CCGCGACGCGCAGGCCAAGGCCCGCGGGATACCATACGAGAAGAAGAAGCGCAAGCGCACGCAGCAGCAGCAGCCTCCCC
CACCGCCGCCGCCGCCGCCCCAGCACCAGCCGGGCGCCGCCGCCGGGGAGGCGTCGAGCTCGTCGTCTGCTGCCGCCGCC
GCCGTCGCAGCAGAAGGCAGTGGCAGCTCCGCCGCCGCCGCCGCCGCCACTAGCCAGACAGGAGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27237.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis