Browse Element(s) Details


OsAffx.27238.1.S1_at

Description tigr:9633.m03678
TID=OsAffx.27238.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g395107/11hypothetical protein
LOC_Os06g394001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39480Os.12304.1.S1_at11/115+23084945..23089060transposon protein, putative, unclassified
LOC_Os05g39480OsAffx.25860.1.S1_x_at11/115+23084945..23089060transposon protein, putative, unclassified
LOC_Os05g39480OsAffx.25860.2.S1_x_at5/115+23084945..23089060transposon protein, putative, unclassified
LOC_Os05g39490OsAffx.25860.5.S1_at4/115+23089939..23093380hypothetical protein
LOC_Os05g39500OsAffx.27237.1.S1_x_at11/115+23095019..23095735expressed protein
LOC_Os05g39510OsAffx.27238.1.S1_at7/115+23101807..23103229hypothetical protein
LOC_Os05g39510OsAffx.9699.1.S1_at2/115+23101807..23103229hypothetical protein
LOC_Os05g39520Os.34987.1.A1_a_at11/115+23107448..23111951dehydration-responsive protein, putative, expressed
LOC_Os05g39530Os.27722.1.S1_at10/115+23112962..23118253ribonuclease P family protein, putative, expressed
LOC_Os05g39540OsAffx.15028.1.S1_at11/115+23121364..23123070ZIP zinc/iron transport family protein, expressed
LOC_Os05g39550OsAffx.27239.1.S1_at10/115+23126209..23129587ZIP Zinc transporter family protein, expressed
LOC_Os05g39550OsAffx.27239.2.S1_at7/115+23126209..23129587ZIP Zinc transporter family protein, expressed
LOC_Os05g39550OsAffx.22046.3.S1_x_at1/115+23126209..23129587ZIP Zinc transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27238.1.S1_at--930--3671NONE
CTAGTTGGCTGCATCGTCAAATCCA
NONE
OsAffx.27238.1.S1_at--262--10051NONE
TAGTTGGCTGCATCGTCAAATCCAT
NONE
OsAffx.27238.1.S1_at--452--6611NONE
GTTGGCTGCATCGTCAAATCCATGT
NONE
OsAffx.27238.1.S1_at--168--8491NONE
TGGCTGCATCGTCAAATCCATGTAT
NONE
OsAffx.27238.1.S1_at--959--97312Chr12:7594260..7594280 (21 bp)
TCAATTCCAATGTAAGAATCCGTAA
NONE
OsAffx.27238.1.S1_at--790--9191Chr05:23102344..23102368 (25 bp)
TCCAATGTAAGAATCCGTAAGAAGA
LOC_Os05g39510
OsAffx.27238.1.S1_at--852--5251Chr05:23102334..23102358 (25 bp)
GAATCCGTAAGAAGATCTTATGGGA
LOC_Os05g39510
OsAffx.27238.1.S1_at--1038--8312Chr09:12107983..12108419 (25 bp)
TGGGAGGTAAAGGAACAACAGAATA
NONE
OsAffx.27238.1.S1_at--391--8172Chr09:12107972..12107996 (25 bp)
GGAACAACAGAATACTATGCGCAAT
NONE
OsAffx.27238.1.S1_at--1070--7316Chr11:27902757..27902780 (24 bp)
GTGCTACACGTTTGGAATTGGTAGT
NONE
OsAffx.27238.1.S1_at--936--2091Chr05:23101854..23101878 (25 bp)
ACACGTTTGGAATTGGTAGTCAAGA
LOC_Os05g39510
Target Sequence 
CTAGTTGGCTGCATCGTCAAATCCATGTATAATGCGATCATCAATTCCAATGTAAGAATCCGTAAGAAGATCTTATGGGA
GGTAAAGGAACAACAGAATACTATGCGCAATGGTGCTACACGTTTGGAATTGGTAGTCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis