Browse Element(s) Details


OsAffx.27239.1.S1_at

Description tigr:9633.m03682
TID=OsAffx.27239.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ZIP Zinc transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3955010/11ZIP Zinc transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39510OsAffx.27238.1.S1_at7/115+23101807..23103229hypothetical protein
LOC_Os05g39510OsAffx.9699.1.S1_at2/115+23101807..23103229hypothetical protein
LOC_Os05g39520Os.34987.1.A1_a_at11/115+23107448..23111951dehydration-responsive protein, putative, expressed
LOC_Os05g39530Os.27722.1.S1_at10/115+23112962..23118253ribonuclease P family protein, putative, expressed
LOC_Os05g39540OsAffx.15028.1.S1_at11/115+23121364..23123070ZIP zinc/iron transport family protein, expressed
LOC_Os05g39550OsAffx.27239.1.S1_at10/115+23126209..23129587ZIP Zinc transporter family protein, expressed
LOC_Os05g39550OsAffx.27239.2.S1_at7/115+23126209..23129587ZIP Zinc transporter family protein, expressed
LOC_Os05g39550OsAffx.22046.3.S1_x_at1/115+23126209..23129587ZIP Zinc transporter family protein, expressed
LOC_Os05g39560Os.28026.1.S1_at11/115+23133272..23135983Zinc transporter 1 precursor, putative, expressed
LOC_Os05g39570Os.47463.1.S1_x_at6/115+23141988..23145685transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g39570Os.14491.2.S1_x_at4/115+23141988..23145685transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0006829biological_processzinc ion transport
GO:0030001biological_processmetal ion transport
GO:0009507cellular_componentchloroplast
GO:0016020cellular_componentmembrane
GO:0005375molecular_functioncopper ion transporter activity
GO:0005385molecular_functionzinc ion transporter activity
GO:0008324molecular_functioncation transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27239.1.S1_at--605--7131Chr05:23127984..23128008 (25 bp)
GTCATATCGGTATCAGAATCGTCCT
LOC_Os05g39550
OsAffx.27239.1.S1_at--433--1011NONE
ACGGGATTCCGGCTAGGTTCCATCT
NONE
OsAffx.27239.1.S1_at--87--10091Chr05:23129284..23129308 (25 bp)
TAGGTTCCATCTTAAGTCTGCAGTG
LOC_Os05g39550
OsAffx.27239.1.S1_at--981--7171Chr05:23129299..23129323 (25 bp)
GTCTGCAGTGACAATGGCCATCTTC
LOC_Os05g39550
OsAffx.27239.1.S1_at--855--9251Chr05:23129327..23129351 (25 bp)
TCGCTAACCACACCGGTTGGGATTA
LOC_Os05g39550
OsAffx.27239.1.S1_at--738--151Chr05:23129348..23129372 (25 bp)
ATTATGATCGGTATCGGCATCTCCT
LOC_Os05g39550
OsAffx.27239.1.S1_at--498--471Chr05:23129366..23129390 (25 bp)
ATCTCCTCCGCCTACAATGAGAATA
LOC_Os05g39550
OsAffx.27239.1.S1_at--132--1951Chr05:23129396..23129420 (25 bp)
ACGGCCCTGATCGTGGAAGGCATTC
LOC_Os05g39550
OsAffx.27239.1.S1_at--115--8511Chr05:23129409..23129433 (25 bp)
TGGAAGGCATTCTCGACGCAGCGGC
LOC_Os05g39550
OsAffx.27239.1.S1_at--695--8511Chr05:23129437..23129461 (25 bp)
TGGAATCCTCAACTACATGGCGCTC
LOC_Os05g39550
OsAffx.27239.1.S1_at--347--4811Chr05:23129458..23129482 (25 bp)
GCTCGTCGACCTTCTAGCTGAAGAT
LOC_Os05g39550
Target Sequence 
GTCATATCGGTATCAGAATCGTCCTGTTTTTGAACGGGATTCCGGCTAGGTTCCATCTTAAGTCTGCAGTGACAATGGCC
ATCTTCTTCTCGCTAACCACACCGGTTGGGATTATGATCGGTATCGGCATCTCCTCCGCCTACAATGAGAATAGCCCCAC
GGCCCTGATCGTGGAAGGCATTCTCGACGCAGCGGCTGCTGGAATCCTCAACTACATGGCGCTCGTCGACCTTCTAGCTG
AAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis