Browse Element(s) Details


Os.34987.1.A1_a_at

Description gb:AK066628.1
DB_XREF= gi:32976646
TID=Os.34987.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.34987 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023018G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068N15, full insert sequence.
FL= gb:AK066628.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3952011/11dehydration-responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39480Os.12304.1.S1_at11/115+23084945..23089060transposon protein, putative, unclassified
LOC_Os05g39480OsAffx.25860.1.S1_x_at11/115+23084945..23089060transposon protein, putative, unclassified
LOC_Os05g39480OsAffx.25860.2.S1_x_at5/115+23084945..23089060transposon protein, putative, unclassified
LOC_Os05g39490OsAffx.25860.5.S1_at4/115+23089939..23093380hypothetical protein
LOC_Os05g39500OsAffx.27237.1.S1_x_at11/115+23095019..23095735expressed protein
LOC_Os05g39510OsAffx.27238.1.S1_at7/115+23101807..23103229hypothetical protein
LOC_Os05g39510OsAffx.9699.1.S1_at2/115+23101807..23103229hypothetical protein
LOC_Os05g39520Os.34987.1.A1_a_at11/115+23107448..23111951dehydration-responsive protein, putative, expressed
LOC_Os05g39530Os.27722.1.S1_at10/115+23112962..23118253ribonuclease P family protein, putative, expressed
LOC_Os05g39540OsAffx.15028.1.S1_at11/115+23121364..23123070ZIP zinc/iron transport family protein, expressed
LOC_Os05g39550OsAffx.27239.1.S1_at10/115+23126209..23129587ZIP Zinc transporter family protein, expressed
LOC_Os05g39550OsAffx.27239.2.S1_at7/115+23126209..23129587ZIP Zinc transporter family protein, expressed
LOC_Os05g39550OsAffx.22046.3.S1_x_at1/115+23126209..23129587ZIP Zinc transporter family protein, expressed
LOC_Os05g39560Os.28026.1.S1_at11/115+23133272..23135983Zinc transporter 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34987.1.A1_a_at--92--8691Chr05:23107961..23107985 (25 bp)
TGTGACATCATGGAGGTAGCAGCTG
LOC_Os05g39520
Os.34987.1.A1_a_at--721--2331Chr05:23107872..23107896 (25 bp)
AAAGATGCGGCCAGTTCTCAAGTCC
LOC_Os05g39520
Os.34987.1.A1_a_at--1037--9711Chr05:23107855..23107879 (25 bp)
TCAAGTCCCTGCACTACGAAACTGT
LOC_Os05g39520
Os.34987.1.A1_a_at--544--4811Chr05:23107805..23107829 (25 bp)
GCTAAAAAGGGTTTCTGGCGTTCTG
LOC_Os05g39520
Os.34987.1.A1_a_at--333--8231Chr05:23107781..23107805 (25 bp)
GGCAAGTGAGCCTCCTGATCAGAAT
LOC_Os05g39520
Os.34987.1.A1_a_at--275--3011Chr05:23107759..23107783 (25 bp)
AATGACGCTCAAATGTTTTCAGGGT
LOC_Os05g39520
Os.34987.1.A1_a_at--11--10371Chr05:23107744..23107768 (25 bp)
TTTTCAGGGTAGTCATCAACAGCAA
LOC_Os05g39520
Os.34987.1.A1_a_at--531--6571Chr05:23107708..23107732 (25 bp)
GATTCTTTACATCCCTATTGATTAG
LOC_Os05g39520
Os.34987.1.A1_a_at--213--3111Chr05:23107553..23107577 (25 bp)
AATAGGCTTAGGCTAGTCCACTAGT
LOC_Os05g39520
Os.34987.1.A1_a_at--864--7271Chr05:23107538..23107562 (25 bp)
GTCCACTAGTGCTCACAAGTTTGTA
LOC_Os05g39520
Os.34987.1.A1_a_at--1141--611Chr05:23107460..23107484 (25 bp)
ATGCTCTTTCACGAATACATCCTCT
LOC_Os05g39520
Target Sequence 
TGTGACATCATGGAGGTAGCAGCTGAAATAGACAGGATATTGAGACCTGACAGATGGTTTGTGTTGAGAGACACCACAGA
AATGATAAAAAAGATGCGGCCAGTTCTCAAGTCCCTGCACTACGAAACTGTAGTTGTCAAACAGCAATTTCTTGTTGCTA
AAAAGGGTTTCTGGCGTTCTGGCAAGTGAGCCTCCTGATCAGAATGACGCTCAAATGTTTTCAGGGTAGTCATCAACAGC
AAACAATTCAATTGATTCTTTACATCCCTATTGATTAGTTCNTTATACAGAAGACAGAGTTTGATCAAACCAAGGATTAG
GCATGTTGATTCTACAAAATACTTATACAGAACAGTTAGTTCGACAAAAATACATATACACATCTTGTTTATGNGGGGCC
ATTACAGTAATAGGCTTAGGCTAGTCCACTAGTGCTCACAAGTTTGTAATCATATTATTATTCTTTTACATTCAGAAACA
GATACTTTTCAGGNAAACATTATGCTCTTTCACGAATACATCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34987.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis