Browse Element(s) Details


OsAffx.9699.1.S1_at

Description gb:NM_189633.1
DB_XREF= gi:34906349
TID=OsAffx.9699.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g092406/11retrotransposon protein, putative, LINE subclass
LOC_Os05g395102/11hypothetical protein
LOC_Os09g290901/11retrotransposon protein, putative, unclassified
LOC_Os12g062701/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09206NANA1+4639103..4639912retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09212NANA1+4640863..4641498retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09220Os.3808.4.S1_x_at11/111+4643236..4645055transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g09220Os.3808.2.S1_x_at2/111+4643236..4645055transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g09230Os.10811.1.S1_at11/111+4646958..4648763expressed protein
LOC_Os01g09240OsAffx.9699.1.S1_at6/111+4659641..4661103retrotransposon protein, putative, LINE subclass
LOC_Os01g09246Os.12093.1.S1_at11/111+4670209..4681569glycine-rich protein, putative, expressed
LOC_Os01g09246Os.12093.2.S1_x_at11/111+4670209..4681569glycine-rich protein, putative, expressed
LOC_Os01g09252Os.42888.1.S1_at11/111+4684973..4689916Myosin heavy chain kinase B, putative, expressed
LOC_Os01g09252Os.42888.2.S1_x_at10/111+4684973..4689916Myosin heavy chain kinase B, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9699.1.S1_at--312--82111Chr09:9082743..9082767 (25 bp)
GGAATGATTTGATTTCTCGACTAGC
NONE
OsAffx.9699.1.S1_at--610--94916Chr12:7594157..7594181 (25 bp)
TCTCGACTAGCTAACATAACCCTGT
NONE
OsAffx.9699.1.S1_at--62--1011Chr01:4660262..4660286 (25 bp)
AGGATTGCTTTATTTGGTCGCTATA
LOC_Os01g09240
OsAffx.9699.1.S1_at--1111--7796Chr11:27902236..27902257 (22 bp)
GGTCATTTTTCGGTCAAATCCATGT
NONE
OsAffx.9699.1.S1_at--323--5993Chr08:3919024..3919051 (25 bp)
GAGACCATCCAACATTTTTTCTTTG
NONE
OsAffx.9699.1.S1_at--830--4375Chr10:19182042..19182066 (25 bp)
GCCAAGGAACTTTTACTCCAGTTTG
NONE
OsAffx.9699.1.S1_at--177--871NONE
ATGGCGTGTAGCTGTGTCCGAACAG
NONE
OsAffx.9699.1.S1_at--745--7391Chr01:4658547..4658868 (25 bp)
GTGTCCGAACAGCTTGCTAAAGAGC
NONE
OsAffx.9699.1.S1_at--150--9311Chr01:4658517..4658541 (25 bp)
TCCCCACTCCCATATATTGTTGATT
NONE
OsAffx.9699.1.S1_at--430--6551Chr01:4658496..4658520 (25 bp)
GATTATACTGGAGAGACACTACTAG
NONE
OsAffx.9699.1.S1_at--438--6271Chr01:4658415..4658439 (25 bp)
GATGTAGTTGGTGTTGTCTGTCGAC
NONE
Target Sequence 
GGAATGATTTGATTTCTCGACTAGCTAACATAACCCTGTCAAATGAAAAGGATTGCTTTATTTGGTCGCTATATAAAAAT
GGTCATTTTTCGGTCAAATCCATGTATAATGCGATCATCAATTCCAATGTAATAATCCACAAGAGGATCTTATGGAAGGT
AAAGGTACCACTAAAAATCAAAGTATTTATGTGGTTTCTTCACAAAAAAGTAATCTTGACGAAAGATAACCTCATAAAGA
GAAAATGGAGGGGAAACAAGCAATGCTGTTTTTGTAATACACAAGAGACCATCCAACATTTTTTCTTTGACTGTCATGAA
CAACAGGATACTATGAGCAATGGTGCTACACGCTTGAAATTGGTAGCCAAGGAACTTTTACTCCAGTTTGGATGGCGTGT
AGCTGTGTCCGAACAGCTTGCTAAAGAGCAACCATCCCCACTCCCATATATTGTTGATTATACTGGAGAGACACTACTAG
AATCCAGAAAAGACGAATTATTGCTAAAGGGTGCAATGGAAATTAATTACCTTGGCGATGTAGTTGGTGTTGTCTGTCGA
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis