Browse Element(s) Details


Os.12093.2.S1_x_at

Description gb:NM_189635.1
DB_XREF= gi:34906353
TID=Os.12093.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0924611/11glycine-rich protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09230Os.10811.1.S1_at11/111+4646958..4648763expressed protein
LOC_Os01g09240OsAffx.9699.1.S1_at6/111+4659641..4661103retrotransposon protein, putative, LINE subclass
LOC_Os01g09246Os.12093.1.S1_at11/111+4670209..4681569glycine-rich protein, putative, expressed
LOC_Os01g09246Os.12093.2.S1_x_at11/111+4670209..4681569glycine-rich protein, putative, expressed
LOC_Os01g09252Os.42888.1.S1_at11/111+4684973..4689916Myosin heavy chain kinase B, putative, expressed
LOC_Os01g09252Os.42888.2.S1_x_at10/111+4684973..4689916Myosin heavy chain kinase B, putative, expressed
LOC_Os01g09260OsAffx.9698.1.S1_x_at11/111+4694116..4696594Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os01g09260Os.56214.1.S1_at10/111+4694116..4696594Cytokinin dehydrogenase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12093.2.S1_x_at--540--5151Chr01:4679919..4680101 (25 bp)
GCAACATTCACTGATCACAGGCGGA
LOC_Os01g09246
Os.12093.2.S1_x_at--673--7071Chr01:4680303..4680327 (25 bp)
GTAATCTCAATATTGCTTCTCGCAG
LOC_Os01g09246
Os.12093.2.S1_x_at--486--1111Chr01:4680338..4680362 (25 bp)
AGTGTTACTGACTTTTCTCCAGCTA
LOC_Os01g09246
Os.12093.2.S1_x_at--49--10111Chr01:4680374..4680398 (25 bp)
TATGGCCGATGTTCTCTTAGTTTTA
LOC_Os01g09246
Os.12093.2.S1_x_at--1118--10351Chr01:4680394..4680418 (25 bp)
TTTTATTTGTTCTTCCACTTGGGAT
LOC_Os01g09246
Os.12093.2.S1_x_at--390--331Chr01:4680417..4680441 (25 bp)
ATACTATCACCTTTTCCTGCTGGAA
LOC_Os01g09246
Os.12093.2.S1_x_at--777--10051Chr01:4680455..4680479 (25 bp)
TAGTCATGGACCACGGCGATCAGCA
LOC_Os01g09246
Os.12093.2.S1_x_at--713--10731Chr01:4680716..4680740 (25 bp)
TTGCTTGCGGCCTTGTACACTACAA
LOC_Os01g09246
Os.12093.2.S1_x_at--1112--2751Chr01:4680753..4680777 (25 bp)
AAGACATCCTAGTACGCAGCCATGG
LOC_Os01g09246
Os.12093.2.S1_x_at--904--9311Chr01:4680944..4680968 (25 bp)
TCCCTACTGGACTCATGTTGCTGAA
LOC_Os01g09246
Os.12093.2.S1_x_at--373--10451Chr01:4681009..4681033 (25 bp)
TTAGAGATTCAAGACCGCGCAGTAT
LOC_Os01g09246
Target Sequence 
GCAACATTCACTGATCACAGGCGGAATTCTTGATAGTAATAGCTTAAGGACGCTTAAAGACAGGAGAGATTTGTTTTACC
CGTTTTCTCTCATCTTGCACAACACTAAACCAGTTGGCCATCAGGATCTTGTTGGCTTAGTAATCTCAATATTGCTTCTC
GCAGATTTTAGCTTAGTGTTACTGACTTTTCTCCAGCTATATTCATACTCTATGGCCGATGTTCTCTTAGTTTTATTTGT
TCTTCCACTTGGGATACTATCACCTTTTCCTGCTGGAATAAATGCTCTTTTTAGTCATGGACCACGGCGATCAGCAGGCC
TTGCTCGTGTGTATGCATTATGGAACATTACTTCACTGGTCAATGTTGTTGTGGCTTTTGCTTGCGGCCTTGTACACTAC
AAGTCATCAACCAAAAGACATCCTAGTACGCAGCCATGGAACCTTGGAACGGATGAAAGTGGCTGGTGGCTCTTCCCTAC
TGGACTCATGTTGCTGAAATGCATCCAAGCTAGGCTTGTCGATTGGCATGTGGCTAATTTAGAGATTCAAGACCGCGCAG
TAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12093.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis