Browse Element(s) Details


Os.42888.2.S1_x_at

Description gb:NM_189636.1
DB_XREF= gi:34906355
TID=Os.42888.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42888 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0925210/11Myosin heavy chain kinase B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09240OsAffx.9699.1.S1_at6/111+4659641..4661103retrotransposon protein, putative, LINE subclass
LOC_Os01g09246Os.12093.1.S1_at11/111+4670209..4681569glycine-rich protein, putative, expressed
LOC_Os01g09246Os.12093.2.S1_x_at11/111+4670209..4681569glycine-rich protein, putative, expressed
LOC_Os01g09252Os.42888.1.S1_at11/111+4684973..4689916Myosin heavy chain kinase B, putative, expressed
LOC_Os01g09252Os.42888.2.S1_x_at10/111+4684973..4689916Myosin heavy chain kinase B, putative, expressed
LOC_Os01g09260OsAffx.9698.1.S1_x_at11/111+4694116..4696594Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os01g09260Os.56214.1.S1_at10/111+4694116..4696594Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os01g09270NANA1+4710325..4710726hypothetical protein
LOC_Os01g09280Os.3818.1.S1_a_at11/111+4711519..4715548myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42888.2.S1_x_at--624--1311Chr01:4686784..4686808 (25 bp)
AGATGGTCGCATCATGGCTTGGAAA
LOC_Os01g09252
Os.42888.2.S1_x_at--994--191Chr01:4686872..4686896 (25 bp)
ATTTCGCTCGGTGTCTCAGTAACAA
LOC_Os01g09252
Os.42888.2.S1_x_at--123--9831Chr01:4686891..4686915 (25 bp)
TAACAAGGCTTTACTCTGGCTCACT
LOC_Os01g09252
Os.42888.2.S1_x_at--89--811Chr01:4687037..4687061 (25 bp)
ATGGGACCTTAAAACTCTGCAGTGT
LOC_Os01g09252
Os.42888.2.S1_x_at--838--4771Chr01:4687086..4687110 (25 bp)
GCTGCTGTAACATCTGTGCTTTGTT
LOC_Os01g09252
Os.42888.2.S1_x_at--770--2391Chr01:4687119..4687143 (25 bp)
AAACTATTATCTTGCTCTCTGGACA
LOC_Os01g09252
Os.42888.2.S1_x_at--272--6411Chr01:4687154..4687178 (25 bp)
GATCTGGGCTGCTTCAAAGTCTGGA
LOC_Os01g09252
Os.42888.2.S1_x_at--338--831NONE
ATGGAGTACGCACGCTCTTTGGCAT
NONE
Os.42888.2.S1_x_at--272--5571Chr01:4689441..4689465 (25 bp)
GAAAGACGCCAGTTCTGTTCTGCTC
LOC_Os01g09252
Os.42888.2.S1_x_at--546--3271Chr01:4689472..4689496 (25 bp)
CAACAGCAACTGCATACGTCTGTTC
LOC_Os01g09252
Os.42888.2.S1_x_at--361--2871Chr01:4689631..4689655 (25 bp)
AAGTGAGGACCATCGAGCTCGCAGC
LOC_Os01g09252
Target Sequence 
AGATGGTCGCATCATGGCTTGGAAAATTCCTGACAAGAAGGGTGACTCTGGACCAGTGGCAATCCTCAGTGGCCATGAGC
GCCAAGTGATTTCGCTCGGTGTCTCAGTAACAAGGCTTTACTCTGGCTCACTTGACAAGACCATCAAAGTATGGGACCTT
AAAACTCTGCAGTGTGTCCAAACACTCTCTGAGCACAAAGCTGCTGTAACATCTGTGCTTTGTTGGGATGAAAAACTATT
ATCTTGCTCTCTGGACAAGACTGTAAAGATCTGGGCTGCTTCAAAGTCTGGAGACCTTCAAGTGATATATACCCATTCTG
AGGAGCATGGAGTACGCACGCTCTTTGGCATGCACCGTGTTGGAAAGACGCCAGTTCTGTTCTGCTCCCTCCACAACAGC
AACTGCATACGTCTGTTCGACCTGCCATCGTTCGACGAGATGGGCAAGCTTTTCTCCAAGAAGGAAGTGAGGACCATCGA
GCTCGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42888.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis