Browse Element(s) Details


Os.3818.1.S1_a_at

Description gb:AK071611.1
DB_XREF= gi:32981634
TID=Os.3818.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105I20, full insert sequence.
FL= gb:AK071611.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0928011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09252Os.42888.1.S1_at11/111+4684973..4689916Myosin heavy chain kinase B, putative, expressed
LOC_Os01g09252Os.42888.2.S1_x_at10/111+4684973..4689916Myosin heavy chain kinase B, putative, expressed
LOC_Os01g09260OsAffx.9698.1.S1_x_at11/111+4694116..4696594Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os01g09260Os.56214.1.S1_at10/111+4694116..4696594Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os01g09270NANA1+4710325..4710726hypothetical protein
LOC_Os01g09280Os.3818.1.S1_a_at11/111+4711519..4715548myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09290OsAffx.9696.1.S1_at7/111+4721172..4721561transposon protein, putative, unclassified
LOC_Os01g09300Os.18077.1.S1_at11/111+4723461..4728045oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os01g09310Os.54613.1.S1_x_at11/111+4730819..4734408expressed protein
LOC_Os01g09320Os.12492.1.S1_at11/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09320Os.25052.1.S1_x_at1/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3818.1.S1_a_at--544--8551Chr01:4712094..4712118 (25 bp)
TGGAGATGAACCATGCTGCACCTTT
LOC_Os01g09280
Os.3818.1.S1_a_at--512--8291Chr01:4712030..4712054 (25 bp)
GGCATTAATACCTGTTCCACTAACT
LOC_Os01g09280
Os.3818.1.S1_a_at--869--10231Chr01:4712004..4712028 (25 bp)
TTTGGCCTCCAAATGTTGCTAATGT
LOC_Os01g09280
Os.3818.1.S1_a_at--286--8971Chr01:4711958..4711982 (25 bp)
TGAAATCCTAAAGCCCACTCCAGTG
LOC_Os01g09280
Os.3818.1.S1_a_at--704--10851Chr01:4711896..4711920 (25 bp)
TTGGCATGTCCAAGCTTACCATAGG
LOC_Os01g09280
Os.3818.1.S1_a_at--23--10471Chr01:4711881..4711905 (25 bp)
TTACCATAGGTGACGGCAGCTCTAA
LOC_Os01g09280
Os.3818.1.S1_a_at--883--1571Chr01:4711864..4711888 (25 bp)
AGCTCTAACTCCATAGAACCCTCTG
LOC_Os01g09280
Os.3818.1.S1_a_at--940--3991Chr01:4711832..4711856 (25 bp)
CCTTCAGCTTACTGGACCGACAAAT
LOC_Os01g09280
Os.3818.1.S1_a_at--971--3071Chr01:4711800..4711824 (25 bp)
AATCAGCTTTTCATGTGAACCCACC
LOC_Os01g09280
Os.3818.1.S1_a_at--1009--1691Chr01:4711778..4711802 (25 bp)
ACCAATGGCTGGACCTGACCTAAAT
LOC_Os01g09280
Os.3818.1.S1_a_at--19--2211Chr01:4711746..4711770 (25 bp)
ACAACAGCCCAATTCATGCAGTTTG
LOC_Os01g09280
Target Sequence 
TGGAGATGAACCATGCTGCACCTTTCAAGACTAAATTTGTTNTGACAATGCCAACATTNTACCCGGCATTAATACCTGTT
CCACTAACTCTTTGGCCTCCAAATGTTGCTAATGTGGGTGAATCAGGCACAAATCATGAAATCCTAAAGCCCACTCCAGT
GAATGGAAAGGAGGTGATCAATAAGGCTGATGAGGTTGTTGGCATGTCCAAGCTTACCATAGGTGACGGCAGCTCTAACT
CCATAGAACCCTCTGCTCTTTCCCTTCAGCTTACTGGACCGACAAATACAAGACAATCAGCTTTTCATGTGAACCCACCA
ATGGCTGGACCTGACCTAAATAAGAGAAACAACAGCCCAATTCATGCAGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3818.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis