Browse Element(s) Details


OsAffx.9696.1.S1_at

Description gb:NM_189641.1
DB_XREF= gi:34906365
TID=OsAffx.9696.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g092907/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09260OsAffx.9698.1.S1_x_at11/111+4694116..4696594Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os01g09260Os.56214.1.S1_at10/111+4694116..4696594Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os01g09270NANA1+4710325..4710726hypothetical protein
LOC_Os01g09280Os.3818.1.S1_a_at11/111+4711519..4715548myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09290OsAffx.9696.1.S1_at7/111+4721172..4721561transposon protein, putative, unclassified
LOC_Os01g09300Os.18077.1.S1_at11/111+4723461..4728045oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os01g09310Os.54613.1.S1_x_at11/111+4730819..4734408expressed protein
LOC_Os01g09320Os.12492.1.S1_at11/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09320Os.25052.1.S1_x_at1/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09330OsAffx.10981.2.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09330OsAffx.10981.1.S1_at11/111+4743923..4745712hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9696.1.S1_at--725--7771Chr01:4721096..4721120 (25 bp)
GGCGTCAGTGCCGTCCGATTTTCCG
NONE
OsAffx.9696.1.S1_at--1096--9171Chr01:4721104..4721128 (25 bp)
TGCCGTCCGATTTTCCGGCGGAGAG
NONE
OsAffx.9696.1.S1_at--718--4691Chr01:4721141..4721165 (25 bp)
GCGGCAGAAGCAGGTGTTCGTCCGT
NONE
OsAffx.9696.1.S1_at--1051--7411Chr01:4721154..4721178 (25 bp)
GTGTTCGTCCGTGGCCGGATGCCCA
NONE
OsAffx.9696.1.S1_at--1024--7831Chr01:4721197..4721221 (25 bp)
GGTACGTGGTCCTGTCGGTCATGTC
LOC_Os01g09290
OsAffx.9696.1.S1_at--268--8612Chr01:4721203..4721227 (25 bp)
TGGTCCTGTCGGTCATGTCCACCAT
LOC_Os01g09290
OsAffx.9696.1.S1_at--464--3512Chr01:4721216..4721240 (25 bp)
CATGTCCACCATTGTTGTACCGCGC
LOC_Os01g09290
OsAffx.9696.1.S1_at--257--6991Chr01:4721232..4721256 (25 bp)
GTACCGCGCCTCTACACTGAGCTGA
LOC_Os01g09290
OsAffx.9696.1.S1_at--1038--9851Chr01:4721244..4721268 (25 bp)
TACACTGAGCTGAAGTGCCACCACG
LOC_Os01g09290
OsAffx.9696.1.S1_at--583--2471Chr01:4721310..4721334 (25 bp)
AACACGTACGTCACCAGCGTCATCG
LOC_Os01g09290
OsAffx.9696.1.S1_at--935--1631Chr01:4721325..4721349 (25 bp)
AGCGTCATCGACGTGAACATCGCGA
LOC_Os01g09290
Target Sequence 
GGCGTCAGTGCCGTCCGATTTTCCGGCGGAGAGCTTCGACGACCGGCGGCAGAAGCAGGTGTTCGTCCGTGGCCGGATGC
CCAGCGCGGCCGCCGTCGCCGGGTACGTGGTCCTGTCGGTCATGTCCACCATTGTTGTACCGCGCCTCTACACTGAGCTG
AAGTGCCACCACGTCGCCGTCGCCTGCATCGTCGCGCTGGTGCTCGCCTTCTGCAACACGTACGTCACCAGCGTCATCGA
CGTGAACATCGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis