Browse Element(s) Details


OsAffx.10981.1.S1_at

Description gb:NM_189645.1
DB_XREF= gi:34906373
TID=OsAffx.10981.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0933011/11hypothetical protein
LOC_Os04g411709/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09290OsAffx.9696.1.S1_at7/111+4721172..4721561transposon protein, putative, unclassified
LOC_Os01g09300Os.18077.1.S1_at11/111+4723461..4728045oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os01g09310Os.54613.1.S1_x_at11/111+4730819..4734408expressed protein
LOC_Os01g09320Os.12492.1.S1_at11/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09320Os.25052.1.S1_x_at1/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09330OsAffx.10981.2.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09330OsAffx.10981.1.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09340OsAffx.1136.1.S1_at4/111+4750408..4753380hypothetical protein
LOC_Os01g09350NANA1+4755527..4755790hypothetical protein
LOC_Os01g09360OsAffx.23169.1.S1_s_at11/111+4756748..4757514hypothetical protein
LOC_Os01g09360OsAffx.23169.2.S1_at11/111+4756748..4757514hypothetical protein
LOC_Os01g09370Os.9859.3.S1_x_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.3.S1_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.5.S1_x_at8/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.2.S1_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9853.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09384Os.45957.3.S1_x_at11/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.53325.1.S1_at9/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_at6/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.5.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.45957.4.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.2.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.49445.1.S1_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.4.S1_x_at1/111+4765540..4779508ankyrin-like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10981.1.S1_at--403--5732Chr04:24202555..24202579 (25 bp)
GACTGTGCCAACTTGGTATCTATGC
LOC_Os04g41170
OsAffx.10981.1.S1_at--701--4392Chr04:24202561..24202585 (25 bp)
GCCAACTTGGTATCTATGCTTACGA
LOC_Os04g41170
OsAffx.10981.1.S1_at--786--7852Chr04:24202569..24202593 (25 bp)
GGTATCTATGCTTACGAGCTCTGGA
LOC_Os04g41170
OsAffx.10981.1.S1_at--235--9552Chr04:24202573..24202597 (25 bp)
TCTATGCTTACGAGCTCTGGATTTG
LOC_Os04g41170
OsAffx.10981.1.S1_at--126--9472Chr04:24202588..24202612 (25 bp)
TCTGGATTTGATCGAGCGCAGCTCT
LOC_Os04g41170
OsAffx.10981.1.S1_at--504--6392Chr04:24202597..24202621 (25 bp)
GATCGAGCGCAGCTCTGCCATGTCC
LOC_Os04g41170
OsAffx.10981.1.S1_at--129--3832Chr04:24202611..24202634 (24 bp)
CTGCCATGTCCTCCGGAGTATTAAA
LOC_Os04g41170
OsAffx.10981.1.S1_at--830--3472Chr04:24202615..24202662 (25 bp)
CATGTCCTCCGGAGTATTAAATTTT
LOC_Os04g41170
OsAffx.10981.1.S1_at--423--9831Chr01:4745530..4745554 (25 bp)
TAAATTTTTACTCCAAGCTTGCCTG
LOC_Os01g09330
OsAffx.10981.1.S1_at--953--10331Chr01:4745536..4745560 (25 bp)
TTTACTCCAAGCTTGCCTGATTTTC
LOC_Os01g09330
OsAffx.10981.1.S1_at--665--4372Chr04:24202644..24202669 (25 bp)
CCAAGCTTGCCTGATTTTCGTGTGC
LOC_Os04g41170
Target Sequence 
GACTGTGCCAACTTGGTATCTATGCTTACGAGCTCTGGATTTGATCGAGCGCAGCTCTGCCATGTCCTCCGGAGTATTAA
ATTTTTACTCCAAGCTTGCCTGATTTTCGTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis