Browse Element(s) Details


Os.9859.2.S1_at

Description gb:AK066235.1
DB_XREF= gi:32976253
TID=Os.9859.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0089K24.28 (OSJNBa0089K24.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058O21, full insert sequence.
FL= gb:AK066235.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g093701/11Ankyrin repeat domain protein 28, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09310Os.54613.1.S1_x_at11/111+4730819..4734408expressed protein
LOC_Os01g09320Os.12492.1.S1_at11/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09320Os.25052.1.S1_x_at1/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09330OsAffx.10981.2.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09330OsAffx.10981.1.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09340OsAffx.1136.1.S1_at4/111+4750408..4753380hypothetical protein
LOC_Os01g09350NANA1+4755527..4755790hypothetical protein
LOC_Os01g09360OsAffx.23169.1.S1_s_at11/111+4756748..4757514hypothetical protein
LOC_Os01g09360OsAffx.23169.2.S1_at11/111+4756748..4757514hypothetical protein
LOC_Os01g09370Os.9859.3.S1_x_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.3.S1_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.5.S1_x_at8/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.2.S1_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9853.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09384Os.45957.3.S1_x_at11/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.53325.1.S1_at9/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_at6/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.5.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.45957.4.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.2.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.49445.1.S1_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.4.S1_x_at1/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09400OsAffx.32051.1.S1_x_at1/111+4783280..4784044transposon protein, putative, unclassified
LOC_Os01g09410Os.9853.2.S1_x_at10/111+4788639..4791742expressed protein
LOC_Os01g09410Os.9859.4.S1_x_at2/111+4788639..4791742expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9859.2.S1_at--839--10191Chr01:4758982..4759123 (25 bp)
TATATGATCTGGCTTGCTCACGGAC
LOC_Os01g09370
Os.9859.2.S1_at--739--3391NONE
CAGCTCACATGCTACCCAAGGAAAG
NONE
Os.9859.2.S1_at--484--6231Chr01:4758411..4758430 (20 bp)
GATGGCGATACCTCCAGATGCGCAG
NONE
Os.9859.2.S1_at--55--4831Chr01:4758366..4758390 (25 bp)
GCATAATCGTCCATCAGTAAACTAT
NONE
Os.9859.2.S1_at--224--5491Chr01:4758332..4758356 (25 bp)
GAACTTCTTTTCTTAGCGATGCACT
NONE
Os.9859.2.S1_at--99--10511Chr01:4758270..4758294 (25 bp)
TTCACGGAACTCTCACCAATCGGCA
NONE
Os.9859.2.S1_at--21--4611Chr01:4758241..4758265 (25 bp)
GCGACTGTCCTCTCGTAGTCTCGTA
NONE
Os.9859.2.S1_at--4--10051Chr01:4758226..4758250 (25 bp)
TAGTCTCGTACTCACCTCTACGATG
NONE
Os.9859.2.S1_at--113--351Chr01:4758190..4758214 (25 bp)
ATAAATCCCTGTTATCTATCTGATA
NONE
Os.9859.2.S1_at--554--8971Chr01:4758151..4758175 (25 bp)
TGAACATTGTATCAGTTCCAGGCAA
NONE
Os.9859.2.S1_at--10--8231Chr01:4758131..4758155 (25 bp)
GGCAATTATCAGAACATCAGGCTTA
NONE
Target Sequence 
TATATGATCTGGCTTGCTCACGGACCGACTGCAGTTTTGTACGCAAACAGGAGCATCTGTAGATTGCTCATGGGTGATGC
TGAAGGTGCTCTATCTGATGCTTACAAATGCTGAATGATGCGGCCTAACTGGGCAAAAGCTCGCTATCGTCAGGGTGCAG
CTCACATGCTACCCAAGGAAAGCTAGGGAATTGATGGCGATACCTCCAGATGCGCAGTGAGGCAGAATAACTGCATAATC
GTCCATCAGTAAACTATAACTAGCTGGAACTTCTTTTCTTAGCGATGCACTATTTTGTTGGATATGTGATGAAATGTAAA
GAATGCACTTCACGGAACTCTCACCAATCGGCAGCCAGCGACTGTCCTCTCGTAGTCTCGTACTCACCTCTACGATGGAA
AACCAACCATAAATCCCTGTTATCTATCTGATACTACTCACAACCCCTGAACATTGTATCAGTTCCAGGCAATTATCAGA
ACATCAGGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9859.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis