Browse Element(s) Details


Os.9859.3.S1_at

Description gb:NM_189649.1
DB_XREF= gi:34906381
GEN=P0512G09.21
TID=Os.9859.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0089K24.28 (OSJNBa0089K24.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0512G09.21 (P0512G09.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g093709/11Ankyrin repeat domain protein 28, putative
LOC_Os01g093846/11ankyrin-like protein, putative, expressed
LOC_Os01g080003/11Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09310Os.54613.1.S1_x_at11/111+4730819..4734408expressed protein
LOC_Os01g09320Os.12492.1.S1_at11/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09320Os.25052.1.S1_x_at1/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09330OsAffx.10981.2.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09330OsAffx.10981.1.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09340OsAffx.1136.1.S1_at4/111+4750408..4753380hypothetical protein
LOC_Os01g09350NANA1+4755527..4755790hypothetical protein
LOC_Os01g09360OsAffx.23169.1.S1_s_at11/111+4756748..4757514hypothetical protein
LOC_Os01g09360OsAffx.23169.2.S1_at11/111+4756748..4757514hypothetical protein
LOC_Os01g09370Os.9859.3.S1_x_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.3.S1_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.5.S1_x_at8/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.2.S1_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9853.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09384Os.45957.3.S1_x_at11/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.53325.1.S1_at9/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_at6/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.5.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.45957.4.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.2.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.49445.1.S1_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.4.S1_x_at1/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09400OsAffx.32051.1.S1_x_at1/111+4783280..4784044transposon protein, putative, unclassified
LOC_Os01g09410Os.9853.2.S1_x_at10/111+4788639..4791742expressed protein
LOC_Os01g09410Os.9859.4.S1_x_at2/111+4788639..4791742expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9859.3.S1_at--355--10471Chr01:4763134..4763192 (25 bp)
TTACATATAAATGCCGTCTTAGCTC
LOC_Os01g09370
Os.9859.3.S1_at--794--4712Chr01:4762468..4762795 (25 bp)
GCTGGCACAGATTTATGGCCCATCT
LOC_Os01g09370
Os.9859.3.S1_at--442--8512Chr01:4762466..4762793 (25 bp)
TGGCACAGATTTATGGCCCATCTCA
LOC_Os01g09370
Os.9859.3.S1_at--1028--5113Chr01:4762464..4762484 (21 bp)
GCACAGATTTATGGCCCATCTCATT
LOC_Os01g09370
Os.9859.3.S1_at--677--172Chr01:4771934..4771958 (25 bp)
ATTTATGGCCCATCTCATTCATTGC
LOC_Os01g09384
Os.9859.3.S1_at--602--10432Chr01:4771932..4771956 (25 bp)
TTATGGCCCATCTCATTCATTGCAG
LOC_Os01g09384
Os.9859.3.S1_at--863--872Chr01:4771930..4771954 (25 bp)
ATGGCCCATCTCATTCATTGCAGGA
LOC_Os01g09384
Os.9859.3.S1_at--928--8392Chr01:4771928..4771952 (25 bp)
GGCCCATCTCATTCATTGCAGGATG
LOC_Os01g09384
Os.9859.3.S1_at--201--3552Chr01:4771924..4771948 (25 bp)
CATCTCATTCATTGCAGGATGCTGT
LOC_Os01g09384
Os.9859.3.S1_at--810--5011NONE
GCAGGATGCTGTAAGTCTAACGTAA
NONE
Os.9859.3.S1_at--1162--411NONE
ATGCTGTAAGTCTAACGTAATTGTC
NONE
Target Sequence 
TTACATATAAATGCCGTCTTAGCTCTTAACAAGCATGGGATTGGGGTGCTGCACGCCGCGGCATGCCAGGGCCATCTGAA
TGTTTGCAAGTTCTTGGTGGAGGAATTGGGGGGTGACGTGAATATTGCTGGAAAAGAAGATATAACACCGTTTATGGCCG
CTGCTGAGTCTGGTGATGTTCCTACGGTGGAGTATTTTCTTGATCATAGTGGTGATGTAACAAAAGCAGATGTTAGAGGA
TGCACAGTTCTCCACCATGCTGCTGGCACAGATTTATGGCCCATCTCATTCATTGCAGGATGCTGTAAGTCTAACGTAAT
TGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9859.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis