Browse Element(s) Details


OsAffx.23169.1.S1_s_at

Description gb:NM_189648.1
DB_XREF= gi:34906379
GEN=P0512G09.20
TID=OsAffx.23169.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0512G09.20 (P0512G09.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0936011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09310Os.54613.1.S1_x_at11/111+4730819..4734408expressed protein
LOC_Os01g09320Os.12492.1.S1_at11/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09320Os.25052.1.S1_x_at1/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09330OsAffx.10981.2.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09330OsAffx.10981.1.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09340OsAffx.1136.1.S1_at4/111+4750408..4753380hypothetical protein
LOC_Os01g09350NANA1+4755527..4755790hypothetical protein
LOC_Os01g09360OsAffx.23169.1.S1_s_at11/111+4756748..4757514hypothetical protein
LOC_Os01g09360OsAffx.23169.2.S1_at11/111+4756748..4757514hypothetical protein
LOC_Os01g09370Os.9859.3.S1_x_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.3.S1_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.5.S1_x_at8/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.2.S1_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9853.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09384Os.45957.3.S1_x_at11/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.53325.1.S1_at9/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_at6/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.5.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.45957.4.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.2.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.49445.1.S1_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.4.S1_x_at1/111+4765540..4779508ankyrin-like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23169.1.S1_s_at--574--8291Chr01:4757330..4757354 (25 bp)
GGCTTCGTCCGCATCGAACCAGTGA
LOC_Os01g09360
OsAffx.23169.1.S1_s_at--213--531Chr01:4757318..4757342 (25 bp)
ATCGAACCAGTGATGCGCGGTCCGC
LOC_Os01g09360
OsAffx.23169.1.S1_s_at--68--231Chr01:4757117..4757141 (25 bp)
ATATTCTCCGAGAGCGTGCCTGTCG
LOC_Os01g09360
OsAffx.23169.1.S1_s_at--768--4271Chr01:4757099..4757123 (25 bp)
CCTGTCGTTGGAGAGGAACTGCCTA
LOC_Os01g09360
OsAffx.23169.1.S1_s_at--195--1331Chr01:4757088..4757112 (25 bp)
AGAGGAACTGCCTAGTCTCCATCAG
LOC_Os01g09360
OsAffx.23169.1.S1_s_at--555--10711Chr01:4757047..4757071 (25 bp)
TTGCGGATCCGGACGTTGGCGACAT
LOC_Os01g09360
OsAffx.23169.1.S1_s_at--250--691Chr01:4757011..4757035 (25 bp)
ATGACGGCGTTTTGTTGCTGCGACA
LOC_Os01g09360
OsAffx.23169.1.S1_s_at--442--10511Chr01:4756926..4756950 (25 bp)
TTGAGGAGGTCTTGGTCCCCGACGC
LOC_Os01g09360
OsAffx.23169.1.S1_s_at--395--871Chr01:4756836..4756860 (25 bp)
ATGGCGGCCGCATCGCGATTAGTCA
LOC_Os01g09360
OsAffx.23169.1.S1_s_at--401--531Chr01:4756825..4756849 (25 bp)
ATCGCGATTAGTCAGCACCTGCGCA
LOC_Os01g09360
OsAffx.23169.1.S1_s_at--659--1751Chr01:4756801..4756825 (25 bp)
ACCTCTCTGTGGTGGTCGCAGCGGC
LOC_Os01g09360
Target Sequence 
GGCTTCGTCCGCATCGAACCAGTGATGCGCGGTCCGCGACCCCAGCGCCGCACCCGTCGGTCTCCGCCCCGGCTACCGAG
GTCGCTGGGGAGGGCACATATTCTCCGAGAGCGTGCCTGTCGTTGGAGAGGAACTGCCTAGTCTCCATCAGCAGCGCGCC
GTGCCAGTTGCGGATCCGGACGTTGGCGACATGGACAGCACGGATGACGGCGTTTTGTTGCTGCGACAGCGGCGGTGCCA
TGGCAGCGGAGATGAGCACGCACGGGGAGAGCTCGAGTAAGAAAGAGGTTGAGGAGGTCTTGGTCCCCGACGCCGTGCCC
CAGGATGCCAACGCCACCGACGAGTCCAGCGTCGGGAAGGCTAGTGGCCGCGACAGCGATGGCGGCCGCATCGCGATTAG
TCAGCACCTGCGCACCTCTCTGTGGTGGTCGCAGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23169.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis