Browse Element(s) Details


Os.9859.5.S1_x_at

Description gb:NM_191599.1
DB_XREF= gi:34910281
GEN=OSJNBa0089K24.28
TID=Os.9859.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0089K24.28 (OSJNBa0089K24.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0089K24.28 (OSJNBa0089K24.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0800011/11Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g093708/11Ankyrin repeat domain protein 28, putative
LOC_Os01g093844/11ankyrin-like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07960Os.12006.1.S1_a_at11/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07960Os.56337.1.S1_at1/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07970Os.34466.1.S1_s_at11/111+3851942..3852858expressed protein
LOC_Os01g07980Os.9859.4.S1_x_at11/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.4.S1_at10/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.3.S1_x_at3/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07990OsAffx.31174.1.S1_at11/111+3863762..3867926expressed protein
LOC_Os01g07990OsAffx.31174.3.S1_x_at11/111+3863762..3867926expressed protein
LOC_Os01g08000Os.9859.5.S1_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.1.S1_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.5.S1_x_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.3.S1_x_at4/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.3.S1_at3/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9853.4.S1_x_at1/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08010Os.33974.1.S1_at11/111+3872573..3874870expressed protein
LOC_Os01g08020Os.53395.1.S1_at11/111+3874933..3880819Boron transporter-like protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9859.5.S1_x_at--1068--1851Chr01:3870910..3871038 (25 bp)
ACGACGGCACCAGTGAGAGCGCTCT
LOC_Os01g08000
Os.9859.5.S1_x_at--759--5811Chr01:3870140..3870164 (25 bp)
GACCCAGTATGCAGTCTTAGCTCTT
LOC_Os01g08000
Os.9859.5.S1_x_at--142--4432Chr01:4763070..4763094 (25 bp)
GCCAGGGCCATCTGAATGTTTGCAA
LOC_Os01g09370
Os.9859.5.S1_x_at--919--232Chr01:4762893..4762917 (25 bp)
ATATAACACCGTTTATGGCCGCTGC
LOC_Os01g09370
Os.9859.5.S1_x_at--851--3813Chr01:4787947..4787970 (24 bp)
CTGCTGAGTCTGGTGATGTTCCTAC
NONE
Os.9859.5.S1_x_at--1089--10033Chr01:4772498..4772522 (25 bp)
TAGAGGATGCACAGTTCTCCACCAT
LOC_Os01g09384
Os.9859.5.S1_x_at--1109--2894Chr01:4788489..4788513 (25 bp)
AAGGTAACAGAGTTCTTGCTTTCAA
NONE
Os.9859.5.S1_x_at--997--293Chr01:4771869..4771893 (25 bp)
ATACCTGTTGACATAGACTGTGGCC
LOC_Os01g09384
Os.9859.5.S1_x_at--377--10033Chr01:4771856..4771880 (25 bp)
TAGACTGTGGCCTTGGAACACCACT
LOC_Os01g09384
Os.9859.5.S1_x_at--524--3332Chr01:4762359..4762383 (25 bp)
CACTCTTTCATGCTGCTAACAATGG
LOC_Os01g09370
Os.9859.5.S1_x_at--900--8231Chr01:3868474..3868498 (25 bp)
GGCAAAGCCGCGTGCAATACTGGAT
LOC_Os01g08000
Target Sequence 
ACGACGGCACCAGTGAGAGCGCTCTCCTGAGGGCGGCCTTCGACGGGAACCTCGGACGCCTCAAAGGTATTTTAAAGAGC
CTTGGGATCGAGAAAGGAAAGACCCAGTATGCAGTCTTAGCTCTTAACAAGCATGGGATTGGGATGCTGCACGCCGTGGC
ATGCCAGGGCCATCTGAATGTTTGCAAGTTCTTGGTGGAGGAATTGGGGGGTGACGTGAATATTGCTGGAAAAGAAGATA
TAACACCGTTTATGGCCGCTGCTGAGTCTGGTGATGTTCCTACGGTGCAGTATTTTCTTGATCATGGTGGTGATGTAACA
AAAGCAGATGTTAGAGGATGCACAGTTCTCCACCATGCTGCTGGCACAGGATGCTGTAAGGTAACAGAGTTCTTGCTTTC
AAAAGGGATACCTGTTGACATAGACTGTGGCCTTGGAACACCACTCTTTCATGCTGCTAACAATGGCAAGGATAAGACAC
TGAAGATTTTGTTGGATCACAAGGCAGATAAAAAAACACGCGGCAAAGCCGCGTGCAATACTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9859.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis