Browse Element(s) Details


Os.9859.5.S1_at

Description gb:NM_191599.1
DB_XREF= gi:34910281
GEN=OSJNBa0089K24.28
TID=Os.9859.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0089K24.28 (OSJNBa0089K24.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0089K24.28 (OSJNBa0089K24.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0800011/11Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07960Os.12006.1.S1_a_at11/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07960Os.56337.1.S1_at1/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07970Os.34466.1.S1_s_at11/111+3851942..3852858expressed protein
LOC_Os01g07980Os.9859.4.S1_x_at11/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.4.S1_at10/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.3.S1_x_at3/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07990OsAffx.31174.1.S1_at11/111+3863762..3867926expressed protein
LOC_Os01g07990OsAffx.31174.3.S1_x_at11/111+3863762..3867926expressed protein
LOC_Os01g08000Os.9859.5.S1_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.1.S1_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.5.S1_x_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.3.S1_x_at4/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.3.S1_at3/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9853.4.S1_x_at1/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08010Os.33974.1.S1_at11/111+3872573..3874870expressed protein
LOC_Os01g08020Os.53395.1.S1_at11/111+3874933..3880819Boron transporter-like protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9859.5.S1_at--560--5651Chr01:3868489..3868510 (22 bp)
GATAAAAAAACACGCGGCAAAGCCG
LOC_Os01g08000
Os.9859.5.S1_at--1006--2411Chr01:3868483..3868507 (25 bp)
AAAACACGCGGCAAAGCCGCGTGCA
LOC_Os01g08000
Os.9859.5.S1_at--403--2411Chr01:3868482..3868506 (25 bp)
AAACACGCGGCAAAGCCGCGTGCAA
LOC_Os01g08000
Os.9859.5.S1_at--568--2471Chr01:3868481..3868505 (25 bp)
AACACGCGGCAAAGCCGCGTGCAAT
LOC_Os01g08000
Os.9859.5.S1_at--1089--3931Chr01:3868475..3868499 (25 bp)
CGGCAAAGCCGCGTGCAATACTGGA
LOC_Os01g08000
Os.9859.5.S1_at--899--8231Chr01:3868474..3868498 (25 bp)
GGCAAAGCCGCGTGCAATACTGGAT
LOC_Os01g08000
Os.9859.5.S1_at--963--5133Chr04:30279563..30279582 (20 bp)
GCAAAGCCGCGTGCAATACTGGATG
NONE
Os.9859.5.S1_at--109--3293Chr04:30279563..30279583 (21 bp)
CAAAGCCGCGTGCAATACTGGATGG
NONE
Os.9859.5.S1_at--1137--2353Chr04:30279563..30279584 (22 bp)
AAAGCCGCGTGCAATACTGGATGGG
NONE
Os.9859.5.S1_at--341--2673Chr04:30279563..30279585 (23 bp)
AAGCCGCGTGCAATACTGGATGGGC
NONE
Os.9859.5.S1_at--9--1673Chr04:30279563..30279586 (24 bp)
AGCCGCGTGCAATACTGGATGGGCC
NONE
Target Sequence 
GATAAAAAAACACGCGGCAAAGCCGCGTGCAATACTGGATGGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9859.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis