Browse Element(s) Details


Os.34466.1.S1_s_at

Description gb:AK071289.1
DB_XREF= gi:32981312
TID=Os.34466.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34466 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0089K24.25 (OSJNBa0089K24.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088B10, full insert sequence.
FL= gb:AK071289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0797011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07920OsAffx.10958.1.S1_x_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07920Os.32457.1.S1_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07930Os.32457.2.S1_at11/111+3827294..3828648Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g07940Os.33127.2.S1_x_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07940Os.33127.1.S1_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07950Os.9548.2.S1_s_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07950Os.9548.1.S1_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07960Os.12006.1.S1_a_at11/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07960Os.56337.1.S1_at1/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07970Os.34466.1.S1_s_at11/111+3851942..3852858expressed protein
LOC_Os01g07980Os.9859.4.S1_x_at11/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.4.S1_at10/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.3.S1_x_at3/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07990OsAffx.31174.1.S1_at11/111+3863762..3867926expressed protein
LOC_Os01g07990OsAffx.31174.3.S1_x_at11/111+3863762..3867926expressed protein
LOC_Os01g08000Os.9859.5.S1_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.1.S1_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.5.S1_x_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.3.S1_x_at4/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.3.S1_at3/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9853.4.S1_x_at1/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08010Os.33974.1.S1_at11/111+3872573..3874870expressed protein
LOC_Os01g08020Os.53395.1.S1_at11/111+3874933..3880819Boron transporter-like protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34466.1.S1_s_at--49--6291Chr01:3852214..3852238 (25 bp)
GATGTTGTTGTGTCGTTTTGGTATC
LOC_Os01g07970
Os.34466.1.S1_s_at--308--10411Chr01:3852199..3852223 (25 bp)
TTTTGGTATCAATAACGTCGCCGCC
LOC_Os01g07970
Os.34466.1.S1_s_at--227--4052Chr08:12776333..12776353 (21 bp)
CGACGCCGTCAATGGCCGGAGAAGT
NONE
Os.34466.1.S1_s_at--779--6831Chr01:3852149..3852173 (25 bp)
GTATTAGTATGAGGCCTCGACGGCG
LOC_Os01g07970
Os.34466.1.S1_s_at--877--3931Chr01:3852126..3852150 (25 bp)
CGGCGTGCTTGTCGGATTGATTCCA
LOC_Os01g07970
Os.34466.1.S1_s_at--620--6291Chr01:3852092..3852116 (25 bp)
GATGATTTCATCCTAATATCTCCAT
LOC_Os01g07970
Os.34466.1.S1_s_at--677--251Chr01:3852077..3852101 (25 bp)
ATATCTCCATTTCTGTAACTCATAG
LOC_Os01g07970
Os.34466.1.S1_s_at--257--7051Chr01:3852063..3852087 (25 bp)
GTAACTCATAGTATAGCAGCTAATG
LOC_Os01g07970
Os.34466.1.S1_s_at--1094--5051Chr01:3852048..3852072 (25 bp)
GCAGCTAATGCATCTAAACGTTGTT
LOC_Os01g07970
Os.34466.1.S1_s_at--596--9751Chr01:3852010..3852034 (25 bp)
TAATCTGGTTTCTTCAACCATGGCT
LOC_Os01g07970
Os.34466.1.S1_s_at--1091--2631Chr01:3851995..3852019 (25 bp)
AACCATGGCTTCTTCTGTACTATAC
LOC_Os01g07970
Target Sequence 
GATGTTGTTGTGTCGTTTTGGTATCAATAACGTCGCCGCCGCCGACGCCGTCAATGGCCGGAGAAGTATTAGTATGAGGC
CTCGACGGCGGCGTGCTTGTCGGATTGATTCCATGGAGATGGGATGATTTCATCCTAATATCTCCATTTCTGTAACTCAT
AGTATAGCAGCTAATGCATCTAAACGTTGTTGTAACAAGAAATTTAATCTGGTTTCTTCAACCATGGCTTCTTCTGTACT
ATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34466.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis