Browse Element(s) Details


Os.33127.2.S1_x_at

Description gb:AK073313.1
DB_XREF= gi:32983336
TID=Os.33127.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (OSJNBa0089K24.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033027F03, full insert sequence.
FL= gb:AK073313.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0794011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07870Os.15532.1.S1_at11/111+3801474..3807871multidrug resistance associated protein MRP2, putative, expressed
LOC_Os01g07880OsAffx.1957.1.S1_at11/111+3807990..3808871bZIP transcription factor family protein, expressed
LOC_Os01g07890Os.25117.1.A1_at11/111+3814848..3815560expressed protein
LOC_Os01g07900Os.50446.1.S1_at10/111+3815888..3816584expressed protein
LOC_Os01g07910Os.53199.1.S1_at10/111+3816979..3821315NADH-cytochrome b5 reductase, putative, expressed
LOC_Os01g07920OsAffx.10958.1.S1_x_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07920Os.32457.1.S1_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07930Os.32457.2.S1_at11/111+3827294..3828648Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g07940Os.33127.2.S1_x_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07940Os.33127.1.S1_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07950Os.9548.2.S1_s_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07950Os.9548.1.S1_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07960Os.12006.1.S1_a_at11/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07960Os.56337.1.S1_at1/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07970Os.34466.1.S1_s_at11/111+3851942..3852858expressed protein
LOC_Os01g07980Os.9859.4.S1_x_at11/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.4.S1_at10/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.3.S1_x_at3/111+3855404..3858641ankyrin-like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33127.2.S1_x_at--125--8371Chr01:3832727..3832751 (25 bp)
GGCGTGTTCATGTACGAGATGCTGT
LOC_Os01g07940
Os.33127.2.S1_x_at--477--6011Chr01:3832679..3832703 (25 bp)
GAGAGCAACGAGAAGACCCTCATCA
LOC_Os01g07940
Os.33127.2.S1_x_at--527--8391Chr01:3832578..3832602 (25 bp)
GGCGCAGGACCTGATGTTGCAGCTC
LOC_Os01g07940
Os.33127.2.S1_x_at--397--6291Chr01:3832566..3832590 (25 bp)
GATGTTGCAGCTCCTGGCAAAGAAC
LOC_Os01g07940
Os.33127.2.S1_x_at--117--8231Chr01:3832551..3832575 (25 bp)
GGCAAAGAACCCCAAGAAGCGGCTG
LOC_Os01g07940
Os.33127.2.S1_x_at--230--1511Chr01:3832523..3832547 (25 bp)
AGCACCATGGGCTCCGCCGAGGTGA
LOC_Os01g07940
Os.33127.2.S1_x_at--854--5151Chr01:3832377..3832401 (25 bp)
GCAAGAGCCGTACAACTACCGACCG
LOC_Os01g07940
Os.33127.2.S1_x_at--109--8171Chr01:3832353..3832377 (25 bp)
GGAAAACCACTTCGATTACTTCTGA
LOC_Os01g07940
Os.33127.2.S1_x_at--830--3631Chr01:3832335..3832359 (25 bp)
CTTCTGATCAAGTAGCTGCCATGCA
LOC_Os01g07940
Os.33127.2.S1_x_at--493--4991Chr01:3832300..3832324 (25 bp)
GCATGATGCATCTTGGTTAATTAAT
LOC_Os01g07940
Os.33127.2.S1_x_at--924--2971Chr01:3832223..3832247 (25 bp)
AATGAGTAACCAGTGTTAGTTTCTC
LOC_Os01g07940
Target Sequence 
GGCGTGTTCATGTACGAGATGCTGTACGGCCGGACGCCGTTCAAGGGCGAGAGCAACGAGAAGACCCTCATCAACATCAT
CAAGCAGCCGGTCACCTTCCCTCGCCTCGCCGGCGCCGCCGCCGCCGGCGAATGGGAGGAGATGAAGACGGCGCAGGACC
TGATGTTGCAGCTCCTGGCAAAGAACCCCAAGAAGCGGCTGGGGAGCACCATGGGCTCCGCCGAGGTGAAGCGGCACCCC
TTCTTCAAGGGCGTCAACTGGGCGCTCGTCAGGTCCGTCCGGCCGCCGGAGGTTCCTGCGCCGCCGGCGCCGGCGCCGAA
GAAGGTGATGACGATGAGCAAGAAGGAGCGGCAAGAGCCGTACAACTACCGACCGGAAAACCACTTCGATTACTTCTGAT
CAAGTAGCTGCCATGCATGAGCATGATGCATGATGCATCTTGGTTAATTAATTAATTAATCACTTGTAAGAGGGGAGATT
AGTAGTGTACATAGAGTGCTAATCAATGAGTAACCAGTGTTAGTTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33127.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis