Browse Element(s) Details


Os.50446.1.S1_at

Description gb:AK121228.1
DB_XREF= gi:37990851
TID=Os.50446.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50446 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091M12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091M12, full insert sequence.
FL= gb:AK121228.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0790010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07870Os.15532.1.S1_at11/111+3801474..3807871multidrug resistance associated protein MRP2, putative, expressed
LOC_Os01g07880OsAffx.1957.1.S1_at11/111+3807990..3808871bZIP transcription factor family protein, expressed
LOC_Os01g07890Os.25117.1.A1_at11/111+3814848..3815560expressed protein
LOC_Os01g07900Os.50446.1.S1_at10/111+3815888..3816584expressed protein
LOC_Os01g07910Os.53199.1.S1_at10/111+3816979..3821315NADH-cytochrome b5 reductase, putative, expressed
LOC_Os01g07920OsAffx.10958.1.S1_x_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07920Os.32457.1.S1_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07930Os.32457.2.S1_at11/111+3827294..3828648Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g07940Os.33127.2.S1_x_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07940Os.33127.1.S1_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07950Os.9548.2.S1_s_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07950Os.9548.1.S1_at11/111+3839555..3842239glutaredoxin-related protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50446.1.S1_at--888--3211Chr01:3816418..3816442 (25 bp)
CAAGGTACGCGTGCGATGCGAACCC
LOC_Os01g07900
Os.50446.1.S1_at--476--5431Chr01:3816220..3816244 (25 bp)
GAACCATGTGGTAGCATCTAGGAGA
LOC_Os01g07900
Os.50446.1.S1_at--52--411NONE
ATCTAGGAGAGGCTTTGGTTTCCTC
NONE
Os.50446.1.S1_at--793--4291Chr01:3816177..3816201 (25 bp)
CCTCTTCTGGGATGGGATTCGTGTG
LOC_Os01g07900
Os.50446.1.S1_at--1036--2731Chr01:3816138..3816162 (25 bp)
AAGAAGGCCGCTCGTTTTGGCTTGT
LOC_Os01g07900
Os.50446.1.S1_at--764--4431Chr01:3816070..3816094 (25 bp)
GCCTTAATCGCCCTGATAATCCTGT
LOC_Os01g07900
Os.50446.1.S1_at--50--6471Chr01:3816056..3816080 (25 bp)
GATAATCCTGTCTAGATTGCTCCAT
LOC_Os01g07900
Os.50446.1.S1_at--33--6591Chr01:3816042..3816066 (25 bp)
GATTGCTCCATCCTGGTGCTTGGCA
LOC_Os01g07900
Os.50446.1.S1_at--882--9511Chr01:3816015..3816039 (25 bp)
TCTCTCCTGTAGTGAAGTGATCCGG
LOC_Os01g07900
Os.50446.1.S1_at--524--1111Chr01:3816000..3816024 (25 bp)
AGTGATCCGGTGATTCAGTCACAAT
LOC_Os01g07900
Os.50446.1.S1_at--1087--6591Chr01:3815973..3815997 (25 bp)
GATTGTGATGTCTAGAACCGTCATT
LOC_Os01g07900
Target Sequence 
CAAGGTACGCGTGCGATGCGAACCCCATGCCCGCCACACGGATCCGCGCGCACCCATGGTGCTCTGCCGCCGCAAAATGG
CCCGGCCACTGGTTGCTCCTGCGGCTGCGTGGTCGTGGTGCCGAGGGGGAACTCGGGATCGTCGTCGTCGGTGGCGTAGT
GGATGTCGCCGTCGGCGGGGTGGTGGGATTTGGAACTGGAACCATGTGGTAGCATCTAGGAGAGGCTTTGGTTTCCTCTT
CCCTCTTCTGGGATGGGATTCGTGTGGAAAGCGAGGAGAGAAGAAGGCCGCTCGTTTTGGCTTGTTGCGTGCTAGGGTTT
GGGGAATAGGGGGGCAGCTGGAACCCTCGCCTTAATCGCCCTGATAATCCTGTCTAGATTGCTCCATCCTGGTGCTTGGC
ACTTCTCTCCTGTAGTGAAGTGATCCGGTGATTCAGTCACAATGTGATTGTGATGTCTAGAACCGTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis