Browse Element(s) Details


Os.32457.2.S1_at

Description gb:AK107662.1
DB_XREF= gi:32992871
TID=Os.32457.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32457 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0089K24.18 (OSJNBa0089K24.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-G11, full insert sequence.
FL= gb:AK107662.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0793011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07870Os.15532.1.S1_at11/111+3801474..3807871multidrug resistance associated protein MRP2, putative, expressed
LOC_Os01g07880OsAffx.1957.1.S1_at11/111+3807990..3808871bZIP transcription factor family protein, expressed
LOC_Os01g07890Os.25117.1.A1_at11/111+3814848..3815560expressed protein
LOC_Os01g07900Os.50446.1.S1_at10/111+3815888..3816584expressed protein
LOC_Os01g07910Os.53199.1.S1_at10/111+3816979..3821315NADH-cytochrome b5 reductase, putative, expressed
LOC_Os01g07920OsAffx.10958.1.S1_x_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07920Os.32457.1.S1_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07930Os.32457.2.S1_at11/111+3827294..3828648Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g07940Os.33127.2.S1_x_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07940Os.33127.1.S1_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07950Os.9548.2.S1_s_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07950Os.9548.1.S1_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07960Os.12006.1.S1_a_at11/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07960Os.56337.1.S1_at1/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07970Os.34466.1.S1_s_at11/111+3851942..3852858expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32457.2.S1_at--698--671Chr01:3827589..3827613 (25 bp)
ATGAGCATCCATAAACCAATCGTCG
LOC_Os01g07930
Os.32457.2.S1_at--162--3171Chr01:3827526..3827550 (25 bp)
AATTGCCATGCCATGCATCGATCGA
LOC_Os01g07930
Os.32457.2.S1_at--574--6371Chr01:3827503..3827527 (25 bp)
GATCGTTTCGCGTTGCTACCTTAGC
LOC_Os01g07930
Os.32457.2.S1_at--114--3671Chr01:3827484..3827508 (25 bp)
CTTAGCTCATCGATCGTCGTCAAGA
LOC_Os01g07930
Os.32457.2.S1_at--585--10411Chr01:3827436..3827460 (25 bp)
TTATTTTCCAAATCTGCTCCCAAAC
LOC_Os01g07930
Os.32457.2.S1_at--805--9091Chr01:3827422..3827446 (25 bp)
TGCTCCCAAACCGAACATTGATCTT
LOC_Os01g07930
Os.32457.2.S1_at--630--6431Chr01:3827403..3827427 (25 bp)
GATCTTGTCATTTTACCATCCGTGT
LOC_Os01g07930
Os.32457.2.S1_at--118--7191Chr01:3827380..3827404 (25 bp)
GTCTGTCGGACTCATGTCTGTATGT
LOC_Os01g07930
Os.32457.2.S1_at--151--2571Chr01:3827349..3827373 (25 bp)
AACTGTTGTTGAATTCTGTGCGTGT
LOC_Os01g07930
Os.32457.2.S1_at--106--3891Chr01:3827334..3827358 (25 bp)
CTGTGCGTGTAAGCAGACCTGCATT
LOC_Os01g07930
Os.32457.2.S1_at--689--71Chr01:3827312..3827336 (25 bp)
ATTGCCGTCGTGTCGTAAGAACTGG
LOC_Os01g07930
Target Sequence 
ATGAGCATCCATAAACCAATCGTCGATCTCTCGCTCGCCATGATTGATCGAGCTCCACCTGCCAATTGCCATGCCATGCA
TCGATCGATCGTTTCGCGTTGCTACCTTAGCTCATCGATCGTCGTCAAGAACCAGAACAATTTTATATTTGATTTATTTT
CCAAATCTGCTCCCAAACCGAACATTGATCTTGTCATTTTACCATCCGTGTCTGTCGGACTCATGTCTGTATGTGTCTTA
AACTGTTGTTGAATTCTGTGCGTGTAAGCAGACCTGCATTGCCGTCGTGTCGTAAGAACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32457.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis