Browse Element(s) Details


Os.53199.1.S1_at

Description gb:AK071324.1
DB_XREF= gi:32981347
TID=Os.53199.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53199 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-012-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089J04, full insert sequence.
FL= gb:AK071324.1 gb:AK104306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0791010/11NADH-cytochrome b5 reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07870Os.15532.1.S1_at11/111+3801474..3807871multidrug resistance associated protein MRP2, putative, expressed
LOC_Os01g07880OsAffx.1957.1.S1_at11/111+3807990..3808871bZIP transcription factor family protein, expressed
LOC_Os01g07890Os.25117.1.A1_at11/111+3814848..3815560expressed protein
LOC_Os01g07900Os.50446.1.S1_at10/111+3815888..3816584expressed protein
LOC_Os01g07910Os.53199.1.S1_at10/111+3816979..3821315NADH-cytochrome b5 reductase, putative, expressed
LOC_Os01g07920OsAffx.10958.1.S1_x_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07920Os.32457.1.S1_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07930Os.32457.2.S1_at11/111+3827294..3828648Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g07940Os.33127.2.S1_x_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07940Os.33127.1.S1_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07950Os.9548.2.S1_s_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07950Os.9548.1.S1_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07960Os.12006.1.S1_a_at11/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07960Os.56337.1.S1_at1/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009416biological_processresponse to light stimulus
GO:0042128biological_processnitrate assimilation
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004128molecular_functioncytochrome-b5 reductase activity
GO:0008134molecular_functiontranscription factor binding
GO:0008940molecular_functionnitrate reductase activity
GO:0009703molecular_functionnitrate reductase (NADH) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53199.1.S1_at--397--9731NONE
TCAAGGTATTCTACACGGTGGACAA
NONE
Os.53199.1.S1_at--520--4171Chr01:3817948..3817972 (25 bp)
CCTTGAAAGGTTTGCCACGGCCAGG
LOC_Os01g07910
Os.53199.1.S1_at--876--6571Chr01:3817728..3817943 (25 bp)
GATTCTCTGATCCTTGTTTGTGGTC
LOC_Os01g07910
Os.53199.1.S1_at--186--6871Chr01:3817713..3817737 (25 bp)
GTTTGTGGTCCTCCAGGTATGATGA
LOC_Os01g07910
Os.53199.1.S1_at--596--5911Chr01:3817316..3817339 (24 bp)
GAGCTCACCGGCATTCTGAAAGAGT
LOC_Os01g07910
Os.53199.1.S1_at--763--331Chr01:3817269..3817293 (25 bp)
ATACAAGTTCTGAGTGCGTCTTCAA
LOC_Os01g07910
Os.53199.1.S1_at--503--5271Chr01:3817237..3817261 (25 bp)
GAATGCTGACATGCTTGCTGCAATG
LOC_Os01g07910
Os.53199.1.S1_at--380--591Chr01:3817164..3817188 (25 bp)
ATGCCACAGCAGTTGGGTTCCAGAC
LOC_Os01g07910
Os.53199.1.S1_at--630--371Chr01:3817099..3817123 (25 bp)
ATCACATCTTTTTGCGTGGTTTGCT
LOC_Os01g07910
Os.53199.1.S1_at--801--10591Chr01:3817075..3817099 (25 bp)
TTCTGCGATATGTTCTTGCGGCCCA
LOC_Os01g07910
Os.53199.1.S1_at--892--7931Chr01:3817043..3817067 (25 bp)
GGATATGCATTGCTTCAGCCGTTTA
LOC_Os01g07910
Target Sequence 
TCAAGGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGCTACATATCCAAGGACATTGCCTTG
AAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGA
CAAGGCAAAGGATAGATCGCAGGGCGAGCTCACCGGCATTCTGAAAGAGTTAGGATACACTGCAGAGATGGTATACAAGT
TCTGAGTGCGTCTTCAAGACGTTAGAATGCTGACATGCTTGCTGCAATGGCGCCATGGCAATGATCAAATAAACCACAGC
TGAACACTTCTTTTATTATGCCACAGCAGTTGGGTTCCAGACTTGAGAAAGTTTTGACATTTCTCAATAATGTTCATTGA
GAATCACATCTTTTTGCGTGGTTTGCTTCTGCGATATGTTCTTGCGGCCCATGCACCTGGATATGCATTGCTTCAGCCGT
TTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53199.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis