Browse Element(s) Details


OsAffx.1957.1.S1_at

Description tigr:9629.m00723
TID=OsAffx.1957.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=bZIP transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0788011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07860NANA1+3780493..3783045retrotransposon protein, putative, unclassified
LOC_Os01g07870Os.15532.1.S1_at11/111+3801474..3807871multidrug resistance associated protein MRP2, putative, expressed
LOC_Os01g07880OsAffx.1957.1.S1_at11/111+3807990..3808871bZIP transcription factor family protein, expressed
LOC_Os01g07890Os.25117.1.A1_at11/111+3814848..3815560expressed protein
LOC_Os01g07900Os.50446.1.S1_at10/111+3815888..3816584expressed protein
LOC_Os01g07910Os.53199.1.S1_at10/111+3816979..3821315NADH-cytochrome b5 reductase, putative, expressed
LOC_Os01g07920OsAffx.10958.1.S1_x_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07920Os.32457.1.S1_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07930Os.32457.2.S1_at11/111+3827294..3828648Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g07940Os.33127.2.S1_x_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07940Os.33127.1.S1_at11/111+3831931..3834507Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009640biological_processphotomorphogenesis
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1957.1.S1_at--1017--3411Chr01:3808420..3808444 (25 bp)
CAGAACCGGCTGAAGCGGCTGCTGC
LOC_Os01g07880
OsAffx.1957.1.S1_at--441--1471Chr01:3808359..3808383 (25 bp)
AGAAGGCGTACATGACGGAGCTCGA
LOC_Os01g07880
OsAffx.1957.1.S1_at--368--4651Chr01:3808354..3808378 (25 bp)
GCGTACATGACGGAGCTCGAGGCCA
LOC_Os01g07880
OsAffx.1957.1.S1_at--694--4791Chr01:3808313..3808337 (25 bp)
GCTCCGCAATGCCGAGCTCGAGCAG
LOC_Os01g07880
OsAffx.1957.1.S1_at--515--2591Chr01:3808271..3808294 (24 bp)
AACGAGAACAACACGCTCCGCCAGA
LOC_Os01g07880
OsAffx.1957.1.S1_at--748--2171Chr01:3808189..3808284 (25 bp)
ACACGCTCCGCCAGATACTCAAGAA
LOC_Os01g07880
OsAffx.1957.1.S1_at--546--4171Chr01:3808181..3808201 (21 bp)
CGCCAGATACTCAAGAACACGACGG
LOC_Os01g07880
OsAffx.1957.1.S1_at--830--8351Chr01:3808100..3808124 (25 bp)
GGCGGGAAGAAGCACCATTTCACCA
LOC_Os01g07880
OsAffx.1957.1.S1_at--968--5371Chr01:3808092..3808116 (25 bp)
GAAGCACCATTTCACCAAGAGCTAG
LOC_Os01g07880
OsAffx.1957.1.S1_at--165--3591Chr01:3808085..3808109 (25 bp)
CATTTCACCAAGAGCTAGGAGGAGA
LOC_Os01g07880
OsAffx.1957.1.S1_at--1058--931Chr01:3808020..3808044 (25 bp)
AGGAATTGAATTGTTCATCTGATCT
LOC_Os01g07880
Target Sequence 
CAGAACCGGCTGAAGCGGCTGCTGCGGAACCGCGTGTCGGCGCAGCAGGCGCGGGAGCGGAAGAAGGCGTACATGACGGA
GCTCGAGGCCAAGGCCAAGGACCTCGAGCTCCGCAATGCCGAGCTCGAGCAGCGCGTCTCCACCCTCCAGAACGAGAACA
ACACGCTCCGCCAGATACTCAAGAACACGACGGCGCACGCCGGCAAGAGGGGCGGCGGCGGCGGAGGCAAGGGCGGCGAT
GGCGGCGGCGGCGGGAAGAAGCACCATTTCACCAAGAGCTAGGAGGAGAGGGACTGCGGTGACGGCGGCGGCGGAGGCAG
GGTTGTGGTAGGAATTGAATTGTTCATCTGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis