Browse Element(s) Details


Os.32457.1.S1_at

Description gb:AK070484.1
DB_XREF= gi:32980508
TID=Os.32457.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32457 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0089K24.18 (OSJNBa0089K24.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048G08, full insert sequence.
FL= gb:AK070484.1 gb:AK104673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0792011/11prolyl 4-hydroxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07870Os.15532.1.S1_at11/111+3801474..3807871multidrug resistance associated protein MRP2, putative, expressed
LOC_Os01g07880OsAffx.1957.1.S1_at11/111+3807990..3808871bZIP transcription factor family protein, expressed
LOC_Os01g07890Os.25117.1.A1_at11/111+3814848..3815560expressed protein
LOC_Os01g07900Os.50446.1.S1_at10/111+3815888..3816584expressed protein
LOC_Os01g07910Os.53199.1.S1_at10/111+3816979..3821315NADH-cytochrome b5 reductase, putative, expressed
LOC_Os01g07920OsAffx.10958.1.S1_x_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07920Os.32457.1.S1_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07930Os.32457.2.S1_at11/111+3827294..3828648Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g07940Os.33127.2.S1_x_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07940Os.33127.1.S1_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07950Os.9548.2.S1_s_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07950Os.9548.1.S1_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07960Os.12006.1.S1_a_at11/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07960Os.56337.1.S1_at1/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07970Os.34466.1.S1_s_at11/111+3851942..3852858expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0018401biological_processpeptidyl-proline hydroxylation to 4-hydroxy-L-proline
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004656molecular_functionprocollagen-proline 4-dioxygenase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32457.1.S1_at--225--10091Chr01:3823995..3824019 (25 bp)
TAGGCAGAGAATGGTGTAACAAACT
LOC_Os01g07920
Os.32457.1.S1_at--278--2471Chr01:3823978..3824002 (25 bp)
AACAAACTGTATATGTTGCCCGTTT
LOC_Os01g07920
Os.32457.1.S1_at--129--10131Chr01:3823967..3823991 (25 bp)
TATGTTGCCCGTTTTTCTTTTATGA
LOC_Os01g07920
Os.32457.1.S1_at--441--8811Chr01:3823965..3823989 (25 bp)
TGTTGCCCGTTTTTCTTTTATGATT
LOC_Os01g07920
Os.32457.1.S1_at--236--10571Chr01:3823953..3823977 (25 bp)
TTCTTTTATGATTTACTTTGCGTTT
LOC_Os01g07920
Os.32457.1.S1_at--1069--611Chr01:3823946..3823970 (25 bp)
ATGATTTACTTTGCGTTTGTTAGGA
LOC_Os01g07920
Os.32457.1.S1_at--935--6751Chr01:3823908..3823932 (25 bp)
GTTAATGGATTGACCACTGTTCCCA
LOC_Os01g07920
Os.32457.1.S1_at--241--2971Chr01:3823905..3823929 (25 bp)
AATGGATTGACCACTGTTCCCAAAT
LOC_Os01g07920
Os.32457.1.S1_at--639--6591Chr01:3823901..3823925 (25 bp)
GATTGACCACTGTTCCCAAATTATG
LOC_Os01g07920
Os.32457.1.S1_at--656--5851Chr01:3823897..3823921 (25 bp)
GACCACTGTTCCCAAATTATGGAAA
LOC_Os01g07920
Os.32457.1.S1_at--232--371Chr01:3823872..3823896 (25 bp)
ATAATTTTGTTCCATCAGATGATAA
LOC_Os01g07920
Target Sequence 
TAGGCAGAGAATGGTGTAACAAACTGTATATGTTGCCCGTTTTTCTTTTATGATTTACTTTGCGTTTGTTAGGAAATTTA
ATTTGGAGTTAATGGATTGACCACTGTTCCCAAATTATGGAAAATAATTTTGTTCCATCAGATGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis