Browse Element(s) Details


OsAffx.10958.1.S1_x_at

Description tigr:9629.m00727
TID=OsAffx.10958.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger C-x8-C-x5-C-x3-H type (and similar), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0792011/11prolyl 4-hydroxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07870Os.15532.1.S1_at11/111+3801474..3807871multidrug resistance associated protein MRP2, putative, expressed
LOC_Os01g07880OsAffx.1957.1.S1_at11/111+3807990..3808871bZIP transcription factor family protein, expressed
LOC_Os01g07890Os.25117.1.A1_at11/111+3814848..3815560expressed protein
LOC_Os01g07900Os.50446.1.S1_at10/111+3815888..3816584expressed protein
LOC_Os01g07910Os.53199.1.S1_at10/111+3816979..3821315NADH-cytochrome b5 reductase, putative, expressed
LOC_Os01g07920OsAffx.10958.1.S1_x_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07920Os.32457.1.S1_at11/111+3823844..3827128prolyl 4-hydroxylase, putative, expressed
LOC_Os01g07930Os.32457.2.S1_at11/111+3827294..3828648Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os01g07940Os.33127.2.S1_x_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07940Os.33127.1.S1_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07950Os.9548.2.S1_s_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07950Os.9548.1.S1_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07960Os.12006.1.S1_a_at11/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07960Os.56337.1.S1_at1/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07970Os.34466.1.S1_s_at11/111+3851942..3852858expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0018401biological_processpeptidyl-proline hydroxylation to 4-hydroxy-L-proline
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004656molecular_functionprocollagen-proline 4-dioxygenase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10958.1.S1_x_at--296--6511Chr01:3824798..3824822 (25 bp)
GATATCGCTATGGAGCTTTCTTCCA
LOC_Os01g07920
OsAffx.10958.1.S1_x_at--149--3091Chr01:3824627..3824651 (25 bp)
AATCAAGCAGTGGTGCCCATAGGCT
LOC_Os01g07920
OsAffx.10958.1.S1_x_at--1123--271Chr01:3824609..3824633 (25 bp)
ATAGGCTTGCGACCATTTTGATGTA
LOC_Os01g07920
OsAffx.10958.1.S1_x_at--908--6271Chr01:3824590..3824614 (25 bp)
GATGTATCTTTCTGATGTCAAGCAA
LOC_Os01g07920
OsAffx.10958.1.S1_x_at--454--8971Chr01:3824560..3824584 (25 bp)
TGAAACTGTTTTCCCCAGATCTGAG
LOC_Os01g07920
OsAffx.10958.1.S1_x_at--10--7611Chr01:3824369..3824393 (25 bp)
GGGCACCATCTCAATGTTCTGGTTA
LOC_Os01g07920
OsAffx.10958.1.S1_x_at--346--6791Chr01:3824348..3824372 (25 bp)
GTTATGCAGTGCGACCAGCCAAGGG
LOC_Os01g07920
OsAffx.10958.1.S1_x_at--776--4391Chr01:3824331..3824355 (25 bp)
GCCAAGGGCAATGCAATACTGCTGT
LOC_Os01g07920
OsAffx.10958.1.S1_x_at--33--331Chr01:3824316..3824340 (25 bp)
ATACTGCTGTTCAATTTAAGGCCTG
LOC_Os01g07920
OsAffx.10958.1.S1_x_at--854--10111Chr01:3824265..3824289 (25 bp)
TATGAAGAATGTCCTGTCCTCGAAG
LOC_Os01g07920
OsAffx.10958.1.S1_x_at--225--2451Chr01:3824188..3824212 (25 bp)
AAAATCATCACTTGCATCCGAGGAT
LOC_Os01g07920
Target Sequence 
GATATCGCTATGGAGCTTTCTTCCAAAAGAAAATGGAGAGAGCATTCAGGTCTTGAAGTATGGAGTGAACAGAAGTGGCA
GTATCAAGGAGGAACCTAAATCAAGCAGTGGTGCCCATAGGCTTGCGACCATTTTGATGTATCTTTCTGATGTCAAGCAA
GGTGGTGAAACTGTTTTCCCCAGATCTGAGATGAAGGATGCTCAAGCTAAGGAGGGGGCACCATCTCAATGTTCTGGTTA
TGCAGTGCGACCAGCCAAGGGCAATGCAATACTGCTGTTCAATTTAAGGCCTGATGGAGAAACAGATAAGGATAGCCAAT
ATGAAGAATGTCCTGTCCTCGAAGGAGAGAAATGGCTAGCCATAAAACATATAAATTTGAGAAAATTTGATTATCCAAAA
TCATCACTTGCATCCGAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10958.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis