Browse Element(s) Details


Os.9859.4.S1_at

Description gb:NM_191597.1
DB_XREF= gi:34910277
GEN=OSJNBa0089K24.26
TID=Os.9859.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0089K24.28 (OSJNBa0089K24.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0089K24.26 (OSJNBa0089K24.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0798010/11ankyrin-like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07940Os.33127.2.S1_x_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07940Os.33127.1.S1_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07950Os.9548.2.S1_s_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07950Os.9548.1.S1_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07960Os.12006.1.S1_a_at11/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07960Os.56337.1.S1_at1/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07970Os.34466.1.S1_s_at11/111+3851942..3852858expressed protein
LOC_Os01g07980Os.9859.4.S1_x_at11/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.4.S1_at10/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.3.S1_x_at3/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07990OsAffx.31174.1.S1_at11/111+3863762..3867926expressed protein
LOC_Os01g07990OsAffx.31174.3.S1_x_at11/111+3863762..3867926expressed protein
LOC_Os01g08000Os.9859.5.S1_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.1.S1_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.5.S1_x_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.3.S1_x_at4/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.3.S1_at3/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9853.4.S1_x_at1/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08010Os.33974.1.S1_at11/111+3872573..3874870expressed protein
LOC_Os01g08020Os.53395.1.S1_at11/111+3874933..3880819Boron transporter-like protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9859.4.S1_at--436--3111Chr01:3856215..3856356 (25 bp)
AATATATGATCTGGCAATAGCTCAT
LOC_Os01g07980
Os.9859.4.S1_at--266--6411Chr01:3856208..3856349 (25 bp)
GATCTGGCAATAGCTCATGGACCGA
LOC_Os01g07980
Os.9859.4.S1_at--205--3911Chr01:3856205..3856227 (23 bp)
CTGGCAATAGCTCATGGACCGACTG
LOC_Os01g07980
Os.9859.4.S1_at--22--3111Chr01:3856200..3856224 (25 bp)
AATAGCTCATGGACCGACTGCAGTT
LOC_Os01g07980
Os.9859.4.S1_at--704--4811Chr01:3856124..3856148 (25 bp)
GCTCTTTCTGATGCTTACAGATGCC
LOC_Os01g07980
Os.9859.4.S1_at--109--10591Chr01:3856119..3856143 (25 bp)
TTCTGATGCTTACAGATGCCGAATG
LOC_Os01g07980
Os.9859.4.S1_at--761--3211NONE
CAAGGAGTACAAACATGCGTGTGAT
NONE
Os.9859.4.S1_at--631--6092Chr01:4758733..4758757 (25 bp)
GAGTACAAACATGCGTGTGATGCTC
NONE
Os.9859.4.S1_at--850--632Chr05:2627246..2627265 (20 bp)
ATGCACAAAAATTAGATTCTGGGAA
NONE
Os.9859.4.S1_at--252--10451Chr01:3855912..3855936 (25 bp)
TTAGATTCTGGGAATGTCGAGATTG
LOC_Os01g07980
Os.9859.4.S1_at--954--6492Chr01:4758439..4758695 (25 bp)
GATTGAGAGGGAACTAAGGAAAGCT
NONE
Target Sequence 
AATATATGATCTGGCAATAGCTCATGGACCGACTGCAGTTTTGTACGCAAACAGGAGCATCTGTAGATTGCTCATGGGTG
ATGGTGAAGGTGCTCTTTCTGATGCTTACAGATGCCGAATGATGCGGCCTAACTGGGCAAAAGCTTGCTACCGTCAGGGT
GCAGCTCACATGCTACTCAAGGAGTACAAACATGCGTGTGATGCTCTCATGGATGCACAAAAATTAGATTCTGGGAATGT
CGAGATTGAGAGGGAACTAAGGAAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9859.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis