Browse Element(s) Details


Os.9859.4.S1_x_at

Description gb:NM_191597.1
DB_XREF= gi:34910277
GEN=OSJNBa0089K24.26
TID=Os.9859.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0089K24.28 (OSJNBa0089K24.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0089K24.26 (OSJNBa0089K24.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0798011/11ankyrin-like protein, putative, expressed
LOC_Os01g094102/11expressed protein
LOC_Os01g093701/11Ankyrin repeat domain protein 28, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07940Os.33127.2.S1_x_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07940Os.33127.1.S1_at11/111+3831931..3834507Protein kinase domain containing protein, expressed
LOC_Os01g07950Os.9548.2.S1_s_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07950Os.9548.1.S1_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07960Os.12006.1.S1_a_at11/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07960Os.56337.1.S1_at1/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07970Os.34466.1.S1_s_at11/111+3851942..3852858expressed protein
LOC_Os01g07980Os.9859.4.S1_x_at11/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.4.S1_at10/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.3.S1_x_at3/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07990OsAffx.31174.1.S1_at11/111+3863762..3867926expressed protein
LOC_Os01g07990OsAffx.31174.3.S1_x_at11/111+3863762..3867926expressed protein
LOC_Os01g08000Os.9859.5.S1_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.1.S1_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.5.S1_x_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.3.S1_x_at4/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.3.S1_at3/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9853.4.S1_x_at1/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08010Os.33974.1.S1_at11/111+3872573..3874870expressed protein
LOC_Os01g08020Os.53395.1.S1_at11/111+3874933..3880819Boron transporter-like protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9859.4.S1_x_at--688--8991Chr01:3857677..3857701 (25 bp)
TGAAGGCTGGAGCAAACCCCAATAT
LOC_Os01g07980
Os.9859.4.S1_x_at--642--10313Chr01:4789763..4789882 (25 bp)
TTCTCCAATTCCAAATGTCCCAAAC
LOC_Os01g09410
Os.9859.4.S1_x_at--105--1471Chr01:3856354..3856378 (25 bp)
AGAATTACGCCGCTGCAGCAAAAAT
LOC_Os01g07980
Os.9859.4.S1_x_at--267--6411Chr01:3856208..3856349 (25 bp)
GATCTGGCAATAGCTCATGGACCGA
LOC_Os01g07980
Os.9859.4.S1_x_at--23--3111Chr01:3856200..3856224 (25 bp)
AATAGCTCATGGACCGACTGCAGTT
LOC_Os01g07980
Os.9859.4.S1_x_at--894--7351Chr01:3856132..3856156 (25 bp)
GTGAAGGTGCTCTTTCTGATGCTTA
LOC_Os01g07980
Os.9859.4.S1_x_at--705--10311Chr01:3856120..3856144 (25 bp)
TTTCTGATGCTTACAGATGCCGAAT
LOC_Os01g07980
Os.9859.4.S1_x_at--1014--5272Chr01:4758870..4758894 (25 bp)
GAATGATGCGGCCTAACTGGGCAAA
NONE
Os.9859.4.S1_x_at--139--7332Chr01:4791470..4791489 (20 bp)
GTGCAGCTCACATGCTACTCAAGGA
LOC_Os01g09410
Os.9859.4.S1_x_at--630--6092Chr01:4758733..4758757 (25 bp)
GAGTACAAACATGCGTGTGATGCTC
NONE
Os.9859.4.S1_x_at--1013--7391Chr01:3855938..3855962 (25 bp)
GTGATGCTCTCATGGATGCACAAAA
LOC_Os01g07980
Target Sequence 
TGAAGGCTGGAGCAAACCCCAATATTCCTGATGATTTGGGTTGGTTGCCAATAGAGCATGCTGCATTACGTGATTGCAGG
GAAGAAGTTGAAATGCTATTTCCATTGACTTCTCCAATTCCAAATGTCCCAAACTGGAGTGTTAATGGAATAATCGCTCA
TGCAAAAGTCAAAAATACAAAGCCAATGGATCAACATCAGAAGGAGAGTAGAAAAGTCGTTTTGAAGGCACAGGCAGATT
TGGTATTCAAGCAGAAGAATTACGCCGCTGCAGCAAAAATATATGATCTGGCAATAGCTCATGGACCGACTGCAGTTTTG
TACGCAAACAGGAGCATCTGTAGATTGCTCATGGGTGATGGTGAAGGTGCTCTTTCTGATGCTTACAGATGCCGAATGAT
GCGGCCTAACTGGGCAAAAGCTTGCTACCGTCAGGGTGCAGCTCACATGCTACTCAAGGAGTACAAACATGCGTGTGATG
CTCTCATGGATGCACAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9859.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis