Browse Element(s) Details


Os.33974.1.S1_at

Description gb:AK121275.1
DB_XREF= gi:37990898
TID=Os.33974.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33974 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0089K24.29 (OSJNBa0089K24.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107G08, full insert sequence.
FL= gb:AK073316.1 gb:AK121275.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0801011/11expressed protein
LOC_Os08g420101/11nodulin, putative, expressed
LOC_Os06g119901/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07970Os.34466.1.S1_s_at11/111+3851942..3852858expressed protein
LOC_Os01g07980Os.9859.4.S1_x_at11/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.4.S1_at10/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.3.S1_x_at3/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07990OsAffx.31174.1.S1_at11/111+3863762..3867926expressed protein
LOC_Os01g07990OsAffx.31174.3.S1_x_at11/111+3863762..3867926expressed protein
LOC_Os01g08000Os.9859.5.S1_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.1.S1_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.5.S1_x_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.3.S1_x_at4/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.3.S1_at3/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9853.4.S1_x_at1/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08010Os.33974.1.S1_at11/111+3872573..3874870expressed protein
LOC_Os01g08020Os.53395.1.S1_at11/111+3874933..3880819Boron transporter-like protein 2, putative, expressed
LOC_Os01g08050NANA1+3898186..3898638hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33974.1.S1_at--1014--5391Chr01:3873976..3874000 (25 bp)
GAAGCTTGTCTCATCAGAACACCAC
LOC_Os01g08010
Os.33974.1.S1_at--262--2171Chr01:3873994..3874018 (25 bp)
ACACCACCTACATGACTGCCAGAAG
LOC_Os01g08010
Os.33974.1.S1_at--985--9451Chr01:3874023..3874047 (25 bp)
TCTGAGAGACTCTCCTTTATCTCCA
LOC_Os01g08010
Os.33974.1.S1_at--1140--10411Chr01:3874039..3874063 (25 bp)
TTATCTCCAGTGAAATGCCATATTA
LOC_Os01g08010
Os.33974.1.S1_at--320--231Chr01:3874058..3874082 (25 bp)
ATATTACCTGTCTGGACAAACCATG
LOC_Os01g08010
Os.33974.1.S1_at--591--6371Chr01:3874478..3874502 (25 bp)
GATCGAGGAATTGTCTTACCAGTTT
LOC_Os01g08010
Os.33974.1.S1_at--309--102724Chr12:26320914..26320938 (25 bp)
TTTGCAAGAGCAAGTTCCCAACACT
NONE
Os.33974.1.S1_at--1051--371Chr01:3874694..3874718 (25 bp)
ATCACACGCTAATAGATTACTCCGT
LOC_Os01g08010
Os.33974.1.S1_at--535--10294Chr11:25006749..25006775 (25 bp)
TTTCCGTGCGCACTGTGCATGTTCC
NONE
Os.33974.1.S1_at--684--571Chr01:3874745..3874769 (25 bp)
ATCCTTCCCTAGGATGTGAGCTCCT
LOC_Os01g08010
Os.33974.1.S1_at--1151--3811Chr01:3874768..3874792 (25 bp)
CTGCGTCTGCGTGCTACAGTAAGTT
LOC_Os01g08010
Target Sequence 
GAAGCTTGTCTCATCAGAACACCACCTACATGACTGCCAGAAGGATGTCTGAGAGACTCTCCTTTATCTCCAGTGAAATG
CCATATTACCTGTCTGGACAAACCATGAAAAGGNANTTGATAAACTAGGAATATAACTGGAGATCGAGGAATTGTCTTAC
CAGTTTGAAGATTGGATCCATCAAACACTGTGTTTGCAAGAGCAAGTTCCCAACACTCCCCTCTCGTTTTCCACGCGCAC
GCTTTTTAAACTGCTAAACAATATGTTTTTTTAAAAAAAAGTTTCTATACGAAAGTTGTTTTTTAAAAAAATCATATTGA
TCTATTTTTGGAAAAAAATAGCTAAAATACTTAATTAATCACACGCTAATAGATTACTCCGTTTTCCGTGCGCACTGTGC
ATGTTCCCATCCTTCCCTAGGATGTGAGCTCCTGCGTCTGCGTGCTACAGTAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis