Browse Element(s) Details


Os.9853.2.S1_x_at

Description gb:AK071329.1
DB_XREF= gi:32981352
TID=Os.9853.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023111N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089D09, full insert sequence.
FL= gb:AK071329.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0941010/11expressed protein
LOC_Os01g093842/11ankyrin-like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09370Os.9859.3.S1_x_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.3.S1_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.5.S1_x_at8/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.2.S1_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9853.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09384Os.45957.3.S1_x_at11/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.53325.1.S1_at9/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_at6/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.5.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.45957.4.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.2.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.49445.1.S1_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.4.S1_x_at1/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09400OsAffx.32051.1.S1_x_at1/111+4783280..4784044transposon protein, putative, unclassified
LOC_Os01g09410Os.9853.2.S1_x_at10/111+4788639..4791742expressed protein
LOC_Os01g09410Os.9859.4.S1_x_at2/111+4788639..4791742expressed protein
LOC_Os01g09420Os.9850.1.S1_s_at11/111+4792957..4795256expressed protein
LOC_Os01g09420Os.22772.1.S1_at5/111+4792957..4795256expressed protein
LOC_Os01g09430Os.1465.1.S1_at9/111+4797049..4798979SyrP, putative, expressed
LOC_Os01g09440OsAffx.24130.1.S1_x_at6/111+4804787..4805302hypothetical protein
LOC_Os01g09450Os.19952.1.S1_at11/111+4813647..4815762AUX/IAA family protein, expressed
LOC_Os01g09450OsAffx.26801.1.S1_x_at1/111+4813647..4815762AUX/IAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9853.2.S1_x_at--743--10171Chr01:4789165..4789189 (25 bp)
TATAACTCCCTTAATGTTTGCCGCG
LOC_Os01g09410
Os.9853.2.S1_x_at--609--9171Chr01:4789183..4789207 (25 bp)
TGCCGCGTTGCAAGGGTGTTATACT
LOC_Os01g09410
Os.9853.2.S1_x_at--618--2051Chr01:4789205..4789229 (25 bp)
ACTTACTTCATCAAGATTCTCCTGG
LOC_Os01g09410
Os.9853.2.S1_x_at--416--5951Chr01:4789236..4789260 (25 bp)
GAGCAATCCCTAATATTCCCAATGT
LOC_Os01g09410
Os.9853.2.S1_x_at--331--2191NONE
ACAAAGCCAACGACTCGTGGACCAA
NONE
Os.9853.2.S1_x_at--302--7511Chr01:4791356..4791380 (25 bp)
GTGGACCAACTGCAGTTCTGTACGC
LOC_Os01g09410
Os.9853.2.S1_x_at--701--7311Chr01:4791422..4791446 (25 bp)
GTGCTCTGTCTGATGGAGATGCCGA
LOC_Os01g09410
Os.9853.2.S1_x_at--1137--9051Chr01:4791576..4791600 (25 bp)
TGCATGCGATGCTCACTTGGATACG
LOC_Os01g09410
Os.9853.2.S1_x_at--208--10092Chr01:4791642..4791666 (25 bp)
TAGGTATCATCTTCTGTTTCTCTTG
LOC_Os01g09410
Os.9853.2.S1_x_at--418--6832Chr01:4791657..4791681 (25 bp)
GTTTCTCTTGAGCATGTTTTCCAAT
LOC_Os01g09410
Os.9853.2.S1_x_at--832--2991Chr01:4791686..4791710 (25 bp)
AATGCGGTTGTGCACGGAACATGAC
LOC_Os01g09410
Target Sequence 
TATAACTCCCTTAATGTTTGCCGCGTTGCAAGGGTGTTATACTTACTTCATCAAGATTCTCCTGGAGACTGGAGCAATCC
CTAATATTCCCAATGTTTTGGGTTGGTTGCCAGTAGAGCATGTTGCATCATGTGATTGCAGGGAAGGAGTTGAAATGCTA
TTTCCATTCACATCCCCAAATTCCAAATGTCCCAAACTGGAGTGTTGATGGAATAATTTCTCATGCAAAGGTCAACCATA
CAAAGCCAACGACTCGTGGACCAACTGCAGTTCTGTACGCAAACAAGAGCATTTGTAGATTGCTCATGGGTGATGGTGAA
GGTGCTCTGTCTGATGGAGATGCCGAATGATGCAGCCTAACTGGGCAAAAGCTCACATGCTACTCAAGGAGTAGAAGCAT
GCATGCGATGCTCACTTGGATACGCAAAAATTGGATCCTGGGAGCGTTGAGATTGAGAGGGAACTTAGGTATCATCTTCT
GTTTCTCTTGAGCATGTTTTCCAATCACAAATGCGGTTGTGCACGGAACATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9853.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis