Browse Element(s) Details


Os.1465.1.S1_at

Description gb:NM_189652.1
DB_XREF= gi:34906387
GEN=P0710E05.6
TID=Os.1465.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1465 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0710E05.6 (P0710E05.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0710E05.6 (P0710E05.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g094309/11SyrP, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09384Os.45957.3.S1_x_at11/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.53325.1.S1_at9/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_at6/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.5.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.45957.4.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.2.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.49445.1.S1_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.4.S1_x_at1/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09400OsAffx.32051.1.S1_x_at1/111+4783280..4784044transposon protein, putative, unclassified
LOC_Os01g09410Os.9853.2.S1_x_at10/111+4788639..4791742expressed protein
LOC_Os01g09410Os.9859.4.S1_x_at2/111+4788639..4791742expressed protein
LOC_Os01g09420Os.9850.1.S1_s_at11/111+4792957..4795256expressed protein
LOC_Os01g09420Os.22772.1.S1_at5/111+4792957..4795256expressed protein
LOC_Os01g09430Os.1465.1.S1_at9/111+4797049..4798979SyrP, putative, expressed
LOC_Os01g09440OsAffx.24130.1.S1_x_at6/111+4804787..4805302hypothetical protein
LOC_Os01g09450Os.19952.1.S1_at11/111+4813647..4815762AUX/IAA family protein, expressed
LOC_Os01g09450OsAffx.26801.1.S1_x_at1/111+4813647..4815762AUX/IAA family protein, expressed
LOC_Os01g09460Os.33758.2.S1_s_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09460Os.33758.2.S1_x_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09460Os.33758.1.S1_s_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09470Os.42877.1.S1_at11/111+4823392..4825535IQ calmodulin-binding motif family protein, expressed
LOC_Os01g09470OsAffx.26803.1.S1_x_at2/111+4823392..4825535IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1465.1.S1_at--1062--791Chr01:4797702..4797726 (25 bp)
ATGGGCTGATATACACGAGGGTGTT
LOC_Os01g09430
Os.1465.1.S1_at--965--1331Chr01:4797730..4797754 (25 bp)
AGAGGGTGATGATCCGTCTTCTCCT
LOC_Os01g09430
Os.1465.1.S1_at--146--7151Chr01:4797745..4797769 (25 bp)
GTCTTCTCCTATTGGCCGTGGATGG
LOC_Os01g09430
Os.1465.1.S1_at--965--7511Chr01:4797762..4797786 (25 bp)
GTGGATGGCACTCTACATTTCTCAC
LOC_Os01g09430
Os.1465.1.S1_at--532--7351Chr01:4798491..4798515 (25 bp)
GTGAAGACGATCATGGGCCCGATAC
LOC_Os01g09430
Os.1465.1.S1_at--172--791Chr01:4798503..4798527 (25 bp)
ATGGGCCCGATACCAGCGGTCAAAT
LOC_Os01g09430
Os.1465.1.S1_at--1066--9691Chr01:4798558..4798582 (25 bp)
TCAACAGCATGGTGGCCGCGTACAC
LOC_Os01g09430
Os.1465.1.S1_at--667--551Chr01:4798722..4798746 (25 bp)
ATCCTGCTCATCGACAACTGGGCGG
LOC_Os01g09430
Os.1465.1.S1_at--1053--9591Chr01:4798729..4798753 (25 bp)
TCATCGACAACTGGGCGGTGCTTCA
LOC_Os01g09430
Os.1465.1.S1_at--605--3631NONE
CTTGCTTCGCTCTATGTTCTAGTAA
NONE
Os.1465.1.S1_at--1020--1091Chr01:4802868..4802892 (25 bp)
AGTGGTATGAACCTGACAGCCGCCG
NONE
Target Sequence 
ATGGGCTGATATACACGAGGGTGTTAGGAGAGGGTGATGATCCGTCTTCTCCTATTGGCCGTGGATGGCACTCTACATTT
CTCACCAAAGATAAGAGCATTGCAGAGGAAAGGGCTGCGAAGCTCGGGATGAAGCTGGAATGGACTGAAGACGGGGTGAA
GACGATCATGGGCCCGATACCAGCGGTCAAATGGGACGAGAGCAGGGGGAGGAAGATATGGTTCAACAGCATGGTGGCCG
CGTACACCGGGTGGAAGGACGCCCGGAACGACCCCGTCAGGGCCGTCACCTTCGGCGACGGCTCGCCGCTGCCGGCCGAC
GTCATCGCCGGCTGCGGCGAGATCCTGGAGGAGGAGTGCGTCGCCGTCCCGTGGCGGCAGGGCGACATCCTGCTCATCGA
CAACTGGGCGGTGCTTCACTCCCGGCGATCGTTCGAGCCTCCTCGCCGCATTCTTGCTTCGCTCTATGTTCTAGTAAGTG
GTATGAACCTGACAGCCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis