Browse Element(s) Details


OsAffx.26803.1.S1_x_at

Description tigr:9633.m00863
TID=OsAffx.26803.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0952011/11IQ calmodulin-binding motif family protein, expressed
LOC_Os01g094702/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09500Os.6114.1.S1_at11/115+5316674..5320524Hexokinase 1, putative, expressed
LOC_Os05g09500Os.33758.2.S1_x_at1/115+5316674..5320524Hexokinase 1, putative, expressed
LOC_Os05g09510NANA5+5331321..5332403hypothetical protein
LOC_Os05g09520OsAffx.26803.1.S1_at11/115+5344473..5346052IQ calmodulin-binding motif family protein, expressed
LOC_Os05g09520OsAffx.26803.1.S1_x_at11/115+5344473..5346052IQ calmodulin-binding motif family protein, expressed
LOC_Os05g09520Os.30881.3.S1_x_at1/115+5344473..5346052IQ calmodulin-binding motif family protein, expressed
LOC_Os05g09530OsAffx.26804.1.S1_at11/115+5367805..5369809hypothetical protein
LOC_Os05g09540OsAffx.14613.1.S1_at11/115+5370872..5371546hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26803.1.S1_x_at--875--4611Chr05:5345511..5345535 (25 bp)
GCGAGGACTGGTGCGCCAACTCCAT
LOC_Os05g09520
OsAffx.26803.1.S1_x_at--518--4231Chr05:5345613..5345637 (25 bp)
CCGACTACGACTGGTGCGCGCTGGA
LOC_Os05g09520
OsAffx.26803.1.S1_x_at--305--2031Chr05:5345616..5345640 (25 bp)
ACTACGACTGGTGCGCGCTGGAGAA
LOC_Os05g09520
OsAffx.26803.1.S1_x_at--734--9711Chr05:5345751..5345775 (25 bp)
TCAACTGCCCGAACTACATGTCCAA
LOC_Os05g09520
OsAffx.26803.1.S1_x_at--155--2111Chr05:5345766..5345790 (25 bp)
ACATGTCCAACACGCAGTCGTTCGA
LOC_Os05g09520
OsAffx.26803.1.S1_x_at--1139--2471Chr05:5345774..5345798 (25 bp)
AACACGCAGTCGTTCGAGGCGAAGG
LOC_Os05g09520
OsAffx.26803.1.S1_x_at--690--8031Chr05:5345896..5345920 (25 bp)
GGAGTCCAGGGCGAGCTTGAGCGGC
LOC_Os05g09520
OsAffx.26803.1.S1_x_at--755--3992Chr05:5345920..5345944 (25 bp)
CGTGGGCATGCAGCGCTCGTGCAAC
LOC_Os05g09520
OsAffx.26803.1.S1_x_at--85--4952Chr05:5345950..5345974 (25 bp)
GCAGGAGGCGTTCAACTTCAAGACG
LOC_Os05g09520
OsAffx.26803.1.S1_x_at--996--6751Chr05:5345959..5345983 (25 bp)
GTTCAACTTCAAGACGGCCGTCGTC
LOC_Os05g09520
OsAffx.26803.1.S1_x_at--917--1791Chr05:5345994..5346018 (25 bp)
ACCGCTCGTCGGAGTCCGGCGAGAA
LOC_Os05g09520
Target Sequence 
GCGAGGACTGGTGCGCCAACTCCATGTCGTCGCCGCTCCCGTGCTACCTCCCCGGCGGCGCGCCGCCGCCCCGCATCGCC
GTCCCGACGTCGCGCCACTTCCCCGACTACGACTGGTGCGCGCTGGAGAAGGCCCGGCCGGCGACGGCGCAGAGCACGCC
GCGGTACGCGCACGCGCCGCCGACGCCGACCAAGAGCGTGTGCGGCGGCGGCGGCGGCGGCGGCATCCACTCGTCGCCGC
TCAACTGCCCGAACTACATGTCCAACACGCAGTCGTTCGAGGCGAAGGTGCGTTCGCAGAGCGCGCCGAAGCAGCGGCCG
GAGACCGGCGGCGCCGGCGCCGGCGGCGGCCGGAAGCGGGTGCCGCTGAGCGAGGTGGTGGTGGTGGAGTCCAGGGCGAG
CTTGAGCGGCGTGGGCATGCAGCGCTCGTGCAACCGGGTGCAGGAGGCGTTCAACTTCAAGACGGCCGTCGTCGGCCGCC
TCGACCGCTCGTCGGAGTCCGGCGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26803.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis