Browse Element(s) Details


Os.30881.3.S1_x_at

Description gb:NM_190717.1
DB_XREF= gi:34908517
GEN=P0679C12.29
TID=Os.30881.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.30881 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0679C12.29 (P0679C12.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0679C12.29 (P0679C12.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1730011/11hypothetical protein
LOC_Os01g6429011/11expressed protein
LOC_Os05g095201/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17260Os.439.1.S1_at11/111+9925734..9932727Transcription factor HBP-1b, putative, expressed
LOC_Os01g17260OsAffx.2025.1.S1_x_at10/111+9925734..9932727Transcription factor HBP-1b, putative, expressed
LOC_Os01g17279Os.32656.1.S1_at11/111+9933628..9944713exonuclease family protein, expressed
LOC_Os01g17279Os.40082.1.A1_x_at7/111+9933628..9944713exonuclease family protein, expressed
LOC_Os01g17300Os.30881.3.S1_x_at11/111+9950887..9951870hypothetical protein
LOC_Os01g17300Os.30881.3.S1_at11/111+9950887..9951870hypothetical protein
LOC_Os01g17310NANA1+9953822..9955628retrotransposon, putative, centromere-specific
LOC_Os01g17320Os.16889.1.S1_a_at11/111+9959446..9963493DNA-binding protein, putative, expressed
LOC_Os01g17330Os.446.1.S1_at11/111+9963963..9965851Eukaryotic translation initiation factor 6, putative, expressed
LOC_Os01g17330OsAffx.31630.1.S1_at3/111+9963963..9965851Eukaryotic translation initiation factor 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30881.3.S1_x_at--369--8592Chr01:37649153..37649177 (25 bp)
TGGTACGCCGCTGGCGAAATCTCGC
LOC_Os01g64290
Os.30881.3.S1_x_at--796--3552Chr01:37649184..37649208 (25 bp)
CATCACCATGTATATATTCGCCGTA
LOC_Os01g64290
Os.30881.3.S1_x_at--141--232Chr01:37649197..37649221 (25 bp)
ATATTCGCCGTACTAGTTCTGTTCG
LOC_Os01g64290
Os.30881.3.S1_x_at--111--1232Chr01:37649211..37649235 (25 bp)
AGTTCTGTTCGATCTTGACGTTGTG
LOC_Os01g64290
Os.30881.3.S1_x_at--230--6432Chr01:37649221..37649245 (25 bp)
GATCTTGACGTTGTGTGTTGGCGAT
LOC_Os01g64290
Os.30881.3.S1_x_at--1038--1032Chr01:37649260..37649284 (25 bp)
AGGTGCGCCACCGACGATACGAGGA
LOC_Os01g64290
Os.30881.3.S1_x_at--504--2152Chr01:37649306..37649330 (25 bp)
ACAGCCGGCGGCTGTCGACGAGCAT
LOC_Os01g64290
Os.30881.3.S1_x_at--251--1872Chr01:37649323..37649347 (25 bp)
ACGAGCATCGAGTCGTCGTCGTACG
LOC_Os01g64290
Os.30881.3.S1_x_at--1026--1773Chr05:5345397..5345421 (25 bp)
ACCGGAGCCCCAAGATCGTGGAGGT
LOC_Os05g09520
Os.30881.3.S1_x_at--74--6132Chr01:37649467..37649491 (25 bp)
GAGTGGTGCGCCAACTCCATGTCGT
LOC_Os01g64290
Os.30881.3.S1_x_at--304--2032Chr01:37649573..37649597 (25 bp)
ACTACGACTGGTGCACGCTGGAGAA
LOC_Os01g64290
Target Sequence 
TGGTACGCCGCTGGCGAAATCTCGCCGACGACATCACCATGTATATATTCGCCGTACTAGTTCTGTTCGATCTTGACGTT
GTGTGTTGGCGATGGATGCAGCAGGAGAGGTGCGCCACCGACGATACGAGGAGCNAGCACGGCGTAGCGGCGTACAGCCG
GCGGCTGTCGACGAGCATCGAGTCGTCGTCGTACGGGTACNACCGGAGCCCCAAGATCGTGGAGGTGGACATNGGGAGGC
CCAAGTCGCGGTCGTCGTCGTCGCGGCGGGCGAGNTCCCCNCTGCTCGACGCCGGGTGCGCGAGCGGCGGCGAGGAGTGG
TGCGCCAACTCCATGTCGTCGCTGCTGCCGTGCTACCTCCCCGGCGGCGCNGCCGCACCGCCGCCCCGCATCGCCGTCCC
GACGTCNCGCCACTTCCCGNACTACGACTGGTGCACGCTGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30881.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis