Browse Element(s) Details


Os.446.1.S1_at

Description gb:AK103139.1
DB_XREF= gi:32988348
TID=Os.446.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.446 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033120G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033120G02, full insert sequence.
FL= gb:AK103139.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1733011/11Eukaryotic translation initiation factor 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17279Os.32656.1.S1_at11/111+9933628..9944713exonuclease family protein, expressed
LOC_Os01g17279Os.40082.1.A1_x_at7/111+9933628..9944713exonuclease family protein, expressed
LOC_Os01g17300Os.30881.3.S1_x_at11/111+9950887..9951870hypothetical protein
LOC_Os01g17300Os.30881.3.S1_at11/111+9950887..9951870hypothetical protein
LOC_Os01g17310NANA1+9953822..9955628retrotransposon, putative, centromere-specific
LOC_Os01g17320Os.16889.1.S1_a_at11/111+9959446..9963493DNA-binding protein, putative, expressed
LOC_Os01g17330Os.446.1.S1_at11/111+9963963..9965851Eukaryotic translation initiation factor 6, putative, expressed
LOC_Os01g17330OsAffx.31630.1.S1_at3/111+9963963..9965851Eukaryotic translation initiation factor 6, putative, expressed
LOC_Os01g17360NANA1+9987148..9992824retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.446.1.S1_at--888--9671Chr01:9964484..9964508 (25 bp)
TCACCCGCAGACGTCGGTGGAGGAC
LOC_Os01g17330
Os.446.1.S1_at--51--1731Chr01:9964461..9964485 (25 bp)
ACCAGGCGGAGCTGTCGACGCTGCT
LOC_Os01g17330
Os.446.1.S1_at--1070--9651Chr01:9964242..9964266 (25 bp)
TCAGCAGCTACCTATAGAGAGAGGA
LOC_Os01g17330
Os.446.1.S1_at--172--7671Chr01:9964194..9964218 (25 bp)
GGGATTTTCGGTCAGAATTCAAGAA
LOC_Os01g17330
Os.446.1.S1_at--907--7351Chr01:9964130..9964154 (25 bp)
GTGACAGTAAATGTTCGCGTGGATC
LOC_Os01g17330
Os.446.1.S1_at--655--731Chr01:9964120..9964144 (25 bp)
ATGTTCGCGTGGATCGATGCAGTTT
LOC_Os01g17330
Os.446.1.S1_at--973--4051Chr01:9964106..9964130 (25 bp)
CGATGCAGTTTTGATCCTGTGTCAA
LOC_Os01g17330
Os.446.1.S1_at--211--10792Chr12:3565735..3565759 (25 bp)
TTGTATCTTTGCAAATCTGGAACGA
NONE
Os.446.1.S1_at--338--9451Chr01:9964057..9964081 (25 bp)
TCTGGAACGATGGAAGTGCTTTTTT
LOC_Os01g17330
Os.446.1.S1_at--514--9751Chr01:9964020..9964044 (25 bp)
TAATTTAGTATTATGCTCAGCTCAG
LOC_Os01g17330
Os.446.1.S1_at--536--3752Chr12:3565811..3565833 (23 bp)
CTCAGCTCAGGAAAGAATGTTGTCT
NONE
Target Sequence 
TCACCCGCAGACGTCGGTGGAGGACCAGGCGGAGCTGTCGACGCTGCTGGAGGTGCCACTGGCCGCCGGGTCCATCAACC
GGGGCAGCGAGGTGGTGGCCGCCGGCATGGCGGTGAACGACTGGGCGGCGTTCTGCGGCGCCGACACGACGGCGACGGAG
CTGTCCGTGGTGGAGAGCGTGTTCCGGCTGAGGGACGGACGGCCGGGGGCGCTCGGCGCCGACATGAGCAGGTCGCTCGT
CGTCAGCAGCTACCTATAGAGAGAGGAGGAGGGACCGGTTTTTGCTTTGGGGGATTTTCGGTCAGAATTCAAGAATGCTT
AAAGCCAAAAATATCCCTTGCTGTATCTTGAGTAGTGACAGTAAATGTTCGCGTGGATCGATGCAGTTTTGATCCTGTGT
CAAAGATGAATTTTGTATCTTTGCAAATCTGGAACGATGGAAGTGCTTTTTTGAAGTCAAAATATAATTTAGTATTATGC
TCAGCTCAGGAAAGAATGTTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis