Browse Element(s) Details


Os.30881.3.S1_at

Description gb:NM_190717.1
DB_XREF= gi:34908517
GEN=P0679C12.29
TID=Os.30881.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.30881 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0679C12.29 (P0679C12.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0679C12.29 (P0679C12.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1730011/11hypothetical protein
LOC_Os01g6429011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17260Os.439.1.S1_at11/111+9925734..9932727Transcription factor HBP-1b, putative, expressed
LOC_Os01g17260OsAffx.2025.1.S1_x_at10/111+9925734..9932727Transcription factor HBP-1b, putative, expressed
LOC_Os01g17279Os.32656.1.S1_at11/111+9933628..9944713exonuclease family protein, expressed
LOC_Os01g17279Os.40082.1.A1_x_at7/111+9933628..9944713exonuclease family protein, expressed
LOC_Os01g17300Os.30881.3.S1_x_at11/111+9950887..9951870hypothetical protein
LOC_Os01g17300Os.30881.3.S1_at11/111+9950887..9951870hypothetical protein
LOC_Os01g17310NANA1+9953822..9955628retrotransposon, putative, centromere-specific
LOC_Os01g17320Os.16889.1.S1_a_at11/111+9959446..9963493DNA-binding protein, putative, expressed
LOC_Os01g17330Os.446.1.S1_at11/111+9963963..9965851Eukaryotic translation initiation factor 6, putative, expressed
LOC_Os01g17330OsAffx.31630.1.S1_at3/111+9963963..9965851Eukaryotic translation initiation factor 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30881.3.S1_at--795--3552Chr01:37649184..37649208 (25 bp)
CATCACCATGTATATATTCGCCGTA
LOC_Os01g64290
Os.30881.3.S1_at--156--3372Chr01:37649187..37649211 (25 bp)
CACCATGTATATATTCGCCGTACTA
LOC_Os01g64290
Os.30881.3.S1_at--590--4332Chr01:37649189..37649213 (25 bp)
CCATGTATATATTCGCCGTACTAGT
LOC_Os01g64290
Os.30881.3.S1_at--696--10192Chr01:37649194..37649218 (25 bp)
TATATATTCGCCGTACTAGTTCTGT
LOC_Os01g64290
Os.30881.3.S1_at--1053--10192Chr01:37649196..37649220 (25 bp)
TATATTCGCCGTACTAGTTCTGTTC
LOC_Os01g64290
Os.30881.3.S1_at--857--10212Chr01:37649198..37649222 (25 bp)
TATTCGCCGTACTAGTTCTGTTCGA
LOC_Os01g64290
Os.30881.3.S1_at--534--10632Chr01:37649200..37649224 (25 bp)
TTCGCCGTACTAGTTCTGTTCGATC
LOC_Os01g64290
Os.30881.3.S1_at--162--4512Chr01:37649203..37649227 (25 bp)
GCCGTACTAGTTCTGTTCGATCTTG
LOC_Os01g64290
Os.30881.3.S1_at--721--7012Chr01:37649206..37649230 (25 bp)
GTACTAGTTCTGTTCGATCTTGACG
LOC_Os01g64290
Os.30881.3.S1_at--721--2032Chr01:37649208..37649232 (25 bp)
ACTAGTTCTGTTCGATCTTGACGTT
LOC_Os01g64290
Os.30881.3.S1_at--110--1232Chr01:37649211..37649235 (25 bp)
AGTTCTGTTCGATCTTGACGTTGTG
LOC_Os01g64290
Target Sequence 
CATCACCATGTATATATTCGCCGTACTAGTTCTGTTCGATCTTGACGTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30881.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis