Browse Element(s) Details


OsAffx.26803.1.S1_at

Description tigr:9633.m00863
TID=OsAffx.26803.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0952011/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09500Os.6114.1.S1_at11/115+5316674..5320524Hexokinase 1, putative, expressed
LOC_Os05g09500Os.33758.2.S1_x_at1/115+5316674..5320524Hexokinase 1, putative, expressed
LOC_Os05g09510NANA5+5331321..5332403hypothetical protein
LOC_Os05g09520OsAffx.26803.1.S1_at11/115+5344473..5346052IQ calmodulin-binding motif family protein, expressed
LOC_Os05g09520OsAffx.26803.1.S1_x_at11/115+5344473..5346052IQ calmodulin-binding motif family protein, expressed
LOC_Os05g09520Os.30881.3.S1_x_at1/115+5344473..5346052IQ calmodulin-binding motif family protein, expressed
LOC_Os05g09530OsAffx.26804.1.S1_at11/115+5367805..5369809hypothetical protein
LOC_Os05g09540OsAffx.14613.1.S1_at11/115+5370872..5371546hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26803.1.S1_at--519--4231Chr05:5345613..5345637 (25 bp)
CCGACTACGACTGGTGCGCGCTGGA
LOC_Os05g09520
OsAffx.26803.1.S1_at--515--1951Chr05:5345754..5345778 (25 bp)
ACTGCCCGAACTACATGTCCAACAC
LOC_Os05g09520
OsAffx.26803.1.S1_at--314--9871Chr05:5345765..5345789 (25 bp)
TACATGTCCAACACGCAGTCGTTCG
LOC_Os05g09520
OsAffx.26803.1.S1_at--156--2111Chr05:5345766..5345790 (25 bp)
ACATGTCCAACACGCAGTCGTTCGA
LOC_Os05g09520
OsAffx.26803.1.S1_at--447--751Chr05:5345768..5345792 (25 bp)
ATGTCCAACACGCAGTCGTTCGAGG
LOC_Os05g09520
OsAffx.26803.1.S1_at--288--8711Chr05:5345769..5345793 (25 bp)
TGTCCAACACGCAGTCGTTCGAGGC
LOC_Os05g09520
OsAffx.26803.1.S1_at--536--4371Chr05:5345772..5345796 (25 bp)
CCAACACGCAGTCGTTCGAGGCGAA
LOC_Os05g09520
OsAffx.26803.1.S1_at--1140--2471Chr05:5345774..5345798 (25 bp)
AACACGCAGTCGTTCGAGGCGAAGG
LOC_Os05g09520
OsAffx.26803.1.S1_at--516--10611Chr05:5345786..5345810 (25 bp)
TTCGAGGCGAAGGTGCGTTCGCAGA
LOC_Os05g09520
OsAffx.26803.1.S1_at--533--7491Chr05:5345891..5345915 (25 bp)
GTGGTGGAGTCCAGGGCGAGCTTGA
LOC_Os05g09520
OsAffx.26803.1.S1_at--33--1151Chr05:5345898..5345922 (25 bp)
AGTCCAGGGCGAGCTTGAGCGGCGT
LOC_Os05g09520
Target Sequence 
CCGACTACGACTGGTGCGCGCTGGAGAAGGCCCGGCCGGCGACGGCGCAGAGCACGCCGCGGTACGCGCACGCGCCGCCG
ACGCCGACCAAGAGCGTGTGCGGCGGCGGCGGCGGCGGCGGCATCCACTCGTCGCCGCTCAACTGCCCGAACTACATGTC
CAACACGCAGTCGTTCGAGGCGAAGGTGCGTTCGCAGAGCGCGCCGAAGCAGCGGCCGGAGACCGGCGGCGCCGGCGCCG
GCGGCGGCCGGAAGCGGGTGCCGCTGAGCGAGGTGGTGGTGGTGGAGTCCAGGGCGAGCTTGAGCGGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis