Browse Element(s) Details


Os.6114.1.S1_at

Description gb:AK067988.1
DB_XREF= gi:32978006
TID=Os.6114.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6114 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123D05, full insert sequence.
FL= gb:AK067988.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0950011/11Hexokinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09470OsAffx.8965.1.S1_at1/115+5298616..5301279hypothetical protein
LOC_Os05g09480Os.57374.1.S1_at11/115+5308932..5310841AUX/IAA family protein, expressed
LOC_Os05g09480OsAffx.26801.1.S1_x_at10/115+5308932..5310841AUX/IAA family protein, expressed
LOC_Os05g09480OsAffx.18465.1.S1_at1/115+5308932..5310841AUX/IAA family protein, expressed
LOC_Os05g09490Os.12182.1.S1_at11/115+5313098..5316239Proteasome subunit beta type 7 precursor, putative, expressed
LOC_Os05g09500Os.6114.1.S1_at11/115+5316674..5320524Hexokinase 1, putative, expressed
LOC_Os05g09500Os.33758.2.S1_x_at1/115+5316674..5320524Hexokinase 1, putative, expressed
LOC_Os05g09510NANA5+5331321..5332403hypothetical protein
LOC_Os05g09520OsAffx.26803.1.S1_at11/115+5344473..5346052IQ calmodulin-binding motif family protein, expressed
LOC_Os05g09520OsAffx.26803.1.S1_x_at11/115+5344473..5346052IQ calmodulin-binding motif family protein, expressed
LOC_Os05g09520Os.30881.3.S1_x_at1/115+5344473..5346052IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009747biological_processhexokinase-dependent signaling
GO:0010182biological_processsugar mediated signaling
GO:0005739cellular_componentmitochondrion
GO:0004396molecular_functionhexokinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6114.1.S1_at--435--6871Chr05:5317213..5317237 (25 bp)
GTATTCCCTCTATCCATTTTATGCA
LOC_Os05g09500
Os.6114.1.S1_at--478--2071Chr05:5317180..5317204 (25 bp)
ACATTACACGGCATTGTCCACTTTT
LOC_Os05g09500
Os.6114.1.S1_at--736--7271Chr05:5317165..5317189 (25 bp)
GTCCACTTTTACCACAGATCACAGA
LOC_Os05g09500
Os.6114.1.S1_at--244--7371Chr05:5317103..5317126 (24 bp)
GTGACATCGTCACCCGAAGATCAGA
LOC_Os05g09500
Os.6114.1.S1_at--587--1651Chr05:5317012..5317036 (25 bp)
AGCGAAAGTCGGTCATCGCCATCGA
LOC_Os05g09500
Os.6114.1.S1_at--225--5211Chr05:5316962..5316986 (25 bp)
GAATTCCGGCAGTGCCTGGAGACCA
LOC_Os05g09500
Os.6114.1.S1_at--463--8551Chr05:5316946..5316970 (25 bp)
TGGAGACCACGCTGACGGAGTTGCT
LOC_Os05g09500
Os.6114.1.S1_at--94--7231Chr05:5316909..5316933 (25 bp)
GTCGAAGTCGGTGGCTGTCAAGCTT
LOC_Os05g09500
Os.6114.1.S1_at--22--2691Chr05:5316890..5316914 (25 bp)
AAGCTTGCAAACGACGGGTCTGGCC
LOC_Os05g09500
Os.6114.1.S1_at--98--4771Chr05:5316845..5316869 (25 bp)
GCTGCTCATTCTCAGTACCTGAATT
LOC_Os05g09500
Os.6114.1.S1_at--359--6571Chr05:5316820..5316844 (25 bp)
GATTCCCCATAGACAGAGTTCCAAC
LOC_Os05g09500
Target Sequence 
GTATTCCCTCTATCCATTTTATGCACAATGAACACATTACACGGCATTGTCCACTTTTACCACAGATCACAGACACATCC
TTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGACATCGTCACCCGAAGATCAGACCGGCTGGCTGCTGCTGGGATCGT
AGGGATCCTCAGGAAGATCGGCAGAGGCGTCCCAGGCGACAAGCGAAAGTCGGTCATCGCCATCGATGGCGGTCTATATG
AACATTACACCGAATTCCGGCAGTGCCTGGAGACCACGCTGACGGAGTTGCTCGGAGAAGAGGCGTCGAAGTCGGTGGCT
GTCAAGCTTGCAAACGACGGGTCTGGCCTTGGAGCTGCACTGATTGCAGCTGCTCATTCTCAGTACCTGAATTGATTCCC
CATAGACAGAGTTCCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis